
PFRMAT AL
TARGET T0096
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1dpr_A
P    8 D 3
A    9 L 4
G   10 V 5
F   11 D 6
A   12 T 7
E   13 T 8
E   14 E 9
Y   15 M 10
I   16 Y 11
I   17 L 12
E   18 R 13
S   19 T 14
I   20 I 15
W   21 Y 16
N   22 E 17
N   23 L 18
R   24 E 19
F   25 E 20
P   26 E 21
P   27 G 22
G   28 V 23
T   29 T 24
I   30 P 25
A   33 L 26
E   34 R 27
R   35 A 28
E   36 R 29
L   37 I 30
S   38 A 31
E   39 E 32
L   40 R 33
I   41 L 34
G   42 E 35
V   43 Q 36
T   44 S 37
R   45 G 38
T   46 P 39
T   47 T 40
L   48 V 41
R   49 S 42
E   50 Q 43
V   51 T 44
L   52 V 45
Q   53 A 46
R   54 R 47
L   55 M 48
A   56 E 49
R   57 R 50
D   58 D 51
G   59 G 52
W   60 L 53
L   61 V 54
T   62 V 55
I   63 V 56
Q   64 A 57
H   65 S 58
G   66 D 59
K   67 R 60
P   68 S 61
T   69 L 62
K   70 Q 63
V   71 M 64
N   72 T 87
N   73 D 88
F   74 I 89
W   75 I 90
E   76 G 91
T   77 L 92
S   78 D 93
G   79 I 94
L   80 N 95
N   81 K 96
I   82 V 97
L   83 H 98
E   84 D 99
T   85 E 100
L   86 A 101
A   87 C 102
R   88 R 103
L   89 W 104
D   90 E 105
H   91 H 106
E   92 V 107
S   93 M 108
V   94 S 109
P   95 D 110
Q   96 E 111
L   97 V 112
I   98 E 113
D   99 R 114
N  100 R 115
L  101 L 116
L  102 V 117
S  103 K 118
V  104 V 119
R  105 L 120
T  106 K 121
N  107 D 122
I  108 V 123
S  109 S 124
T  110 R 125
I  111 S 126
F  112 P 127
I  113 F 128
R  114 G 129
T  115 N 130
A  116 P 131
F  117 I 132
R  118 P 133
Q  119 G 134
H  120 L 135
P  121 D 136
TER
PARENT NONE 122 239
TER
END

