
PFRMAT AL
TARGET T0096
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1smt_A
K    4 E 24
A    5 L 25
Q    6 Q 26
S    7 A 27
P    8 I 28
A    9 A 29
G   10 P 30
F   11 E 31
A   12 V 32
E   13 A 33
E   14 Q 34
Y   15 S 35
I   16 L 36
I   17 A 37
E   18 E 38
S   19 L 54
I   20 L 55
W   21 A 56
N   22 R 57
N   23 S 58
R   24 E 59
F   25 L 60
P   26 C 61
P   27 V 62
G   28 G 63
T   29 D 64
L   37 L 65
S   38 A 66
E   39 Q 67
L   40 A 68
I   41 I 69
G   42 G 70
V   43 V 71
T   44 S 72
R   45 E 73
T   46 S 74
T   47 A 75
L   48 V 76
R   49 S 77
E   50 H 78
V   51 Q 79
L   52 L 80
Q   53 R 81
R   54 S 82
L   55 L 83
A   56 R 84
R   57 N 85
D   58 L 86
G   59 R 87
W   60 L 88
L   61 V 89
T   62 S 90
I   63 R 92
Q   64 K 93
H   65 Q 94
G   66 G 95
K   67 R 96
P   68 H 97
T   69 V 98
K   70 Y 99
V   71 Y 100
N   73 Q 101
F   74 L 102
W   75 Q 103
E   76 D 104
T   77 H 105
S   78 H 106
G   79 I 107
L   80 V 108
N   81 A 109
I   82 L 110
L   83 Y 111
E   84 Q 112
T   85 N 113
L   86 A 114
A   87 L 115
R   88 D 116
L   89 H 117
D   90 L 118
H   91 Q 119
E   92 E 120
S   93 C 121
TER
PARENT NONE 94 239
TER
END

