
PFRMAT AL
TARGET T0096
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1bia
S    7 M 1
P    8 K 2
A    9 D 3
G   10 N 4
F   11 T 5
A   12 V 6
E   13 P 7
E   14 L 8
Y   15 K 9
I   16 L 10
I   17 I 11
E   18 A 12
S   19 L 13
I   20 L 14
W   21 A 15
N   22 N 16
N   23 G 17
R   24 E 18
F   25 F 19
P   26 H 20
P   27 S 21
G   28 G 22
R   35 E 23
E   36 Q 24
L   37 L 25
S   38 G 26
E   39 E 27
L   40 T 28
I   41 L 29
G   42 G 30
V   43 M 31
T   44 S 32
R   45 R 33
T   46 A 34
T   47 A 35
L   48 I 36
R   49 N 37
E   50 K 38
V   51 H 39
L   52 I 40
Q   53 Q 41
R   54 T 42
L   55 L 43
A   56 R 44
R   57 D 45
D   58 W 46
G   59 G 47
W   60 V 48
L   61 V 50
T   62 F 51
I   63 T 52
Q   64 V 53
H   65 P 54
G   66 G 55
K   67 K 56
P   68 G 57
T   69 Y 58
K   70 S 59
V   71 L 60
N   72 P 61
N   73 E 62
F   74 P 63
TER
PARENT NONE 75 239
TER
END

