
PFRMAT AL
TARGET T0096
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 5
PARENT 1bi1
A    5 L 4
Q    6 V 5
S    7 D 6
P    8 T 7
A    9 T 8
G   10 E 9
F   11 M 10
A   12 Y 11
E   13 L 12
E   14 R 13
Y   15 T 14
I   16 I 15
I   17 Y 16
E   18 E 17
S   19 L 18
I   20 E 19
W   21 E 20
N   22 E 21
N   23 G 22
R   24 V 23
L   31 T 24
P   32 P 25
A   33 L 26
E   34 R 27
R   35 A 28
E   36 R 29
L   37 I 30
S   38 A 31
E   39 E 32
L   40 R 33
I   41 L 34
G   42 E 35
V   43 Q 36
T   44 S 37
R   45 G 38
T   46 P 39
T   47 T 40
L   48 V 41
R   49 S 42
E   50 Q 43
V   51 T 44
L   52 V 45
Q   53 A 46
R   54 R 47
L   55 M 48
A   56 E 49
R   57 R 50
D   58 D 51
G   59 G 52
W   60 L 53
L   61 V 54
T   62 V 55
I   63 V 56
Q   64 A 57
H   65 S 58
G   66 D 59
K   67 R 60
P   68 S 61
T   69 L 62
K   70 Q 63
V   71 M 64
TER
PARENT NONE 72 239
TER
END

