
PFRMAT AL
TARGET T0096
AUTHOR 6305-9733-7289
REMARK Similar to 1lea.
METHOD In an iterative SCANPS (Barton et al., 2000, http://barton.ebi.ac.uk/scanps/)
METHOD run against a combined search set comprising the SWALL, PDB and ENSEMBL
METHOD sequence databases, 1lea was identified as a possible homologue for the N-terminal
METHOD domain of the target with an Evalue of 0.942 in the 9th round.
METHOD The corresponding profile alignment of SCANPS run was taken as the basis for the
METHOD pairwise sequence-structure alignment. This was edited and corrected in the Jalview
METHOD alignment editor (M. Clamp, URL: http://www2.ebi.ac.uk/~michele/jalview/contents.html).
METHOD Secondary structure predicted for the target sequence by JPRED2
METHOD (Cuff & Barton, Proteins 40, 502-511, 2000) was taken into account.
MODEL  1
PARENT 1lea
E 14 Q 9
Y 15 E 10
I 16 V 11
I 17 F 12
E 18 D 13
S 19 L 14
I 20 I 15
W 21 R 16
N 22 D 17
N 23 H 18
R 24 I 19
F 25 S 20
P 26 Q 21
P 27 T 22
G 28 G 23
T 29 M 24
A 33 T 27
E 34 R 28
R 35 A 29
E 36 E 30
L 37 I 31
S 38 A 32
E 39 Q 33
L 40 R 34
I 41 L 35
G 42 G 36
R 45 P 40
T 46 N 41
T 47 A 42
L 48 A 43
R 49 E 44
E 50 E 45
V 51 H 46
L 52 L 47
Q 53 K 48
R 54 A 49
L 55 L 50
A 56 A 51
R 57 R 52
D 58 K 53
G 59 G 54
W 60 V 55
L 61 I 56
T 62 E 57
I 63 I 58
Q 64 V 59
H 65 S 60
G 66 G 61
K 67 A 62
P 68 S 63
T 69 R 64
K 70 G 65
V 71 I 66
TER
END


