
PFRMAT AL
TARGET T0096
AUTHOR 6153-6797-7392
METHOD A.The Fold & Function Assignment System (FFAS).
METHOD   The method is based on the sequence profile 
METHOD   matching with dynamic programming.
METHOD 
METHOD References
METHOD 
METHOD 1.Rychlewski, L., Jaroszewski, L., Li, W. & Godzik, A. (2000). 
METHOD   "Comparison of sequence profiles. Strategies for structural
METHOD   predictions using sequence information". Protein Science 9, 232-241 
METHOD 
METHOD 2.Jaroszewski, L., Rychlewski, L. & Godzik, A. (2000). 
METHOD   "Improving the quality of twilight-zone alignments". 
METHOD   Protein Science, in press
METHOD 
METHOD B.The Multiple Model Approach (MMA).
METHOD   In the method multpiple models  of the target are build and
METHOD   subsequently evaluated with statistical potentials.
METHOD 
METHOD References
METHOD 
METHOD 1.Jaroszewski, L., Pawlowski, K. & Godzik, A. (1998). 
METHOD   "Multiple model approach: an extension of comparative modelling". 
METHOD    Journal of Molecular Modelling 4, 294-309 
MODEL 1
PARENT 1b1b_A
P   8   L   4
A   9   V   5
G  10   D   6
F  11   T   7
A  12   T   8
E  13   E   9
E  14   M  10
Y  15   Y  11
I  16   L  12
I  17   R  13
E  18   T  14
I  20   I  15
W  21   Y  16
N  22   D  17
N  23   L  18
R  24   E  19
F  25   E  20
P  26   E  21
P  27   G  22
G  28   V  23
T  29   T  24
P  32   P  25
A  33   L  26
E  34   R  27
R  35   A  28
E  36   R  29
L  37   I  30
S  38   A  31
E  39   E  32
L  40   R  33
I  41   L  34
G  42   D  35
V  43   Q  36
T  44   S  37
R  45   G  38
T  46   P  39
T  47   T  40
L  48   V  41
R  49   S  42
E  50   Q  43
V  51   T  44
L  52   V  45
Q  53   S  46
R  54   R  47
L  55   M  48
A  56   E  49
R  57   R  50
D  58   D  51
G  59   G  52
W  60   L  53
L  61   L  54
T  62   R  55
I  63   V  56
Q  64   A  57
H  65   G  58
G  66   D  59
K  67   R  60
P  68   H  61
T  69   L  62
K  70   E  63
V  71   L  64
N  72   T  65
N  73   E  66
F  74   K  67
W  75   G  68
E  76   R  69
T  77   A  70
S  78   L  71
G  79   A  72
L  80   I  73
N  81   A  74
I  82   V  75
L  83   M  76
E  84   R  77
T  85   K  78
L  86   H  79
A  87   R  80
R  88   L  81
L  89   A  82
D  90   E  83
H  91   R  84
E  92   L  85
S  93   L  86
V  94   V  87
P  95   D  88
Q  96   V  89
L  97   I  90
I  98   G  91
D  99   L  92
N 100   P  93
L 101   W  94
L 102   E  95
S 103   E  96
V 104   V  97
R 105   H  98
T 106   A  99
N 107   E 100
I 113   A 101
R 114   C 102
T 115   R 103
A 116   W 104
F 117   E 105
R 118   H 106
Q 119   V 107
H 120   M 108
P 121   S 109
D 122   E 110
K 123   D 111
A 124   V 112
Q 125   E 113
E 126   R 114
V 127   R 115
L 128   L 116
A 129   V 117
T 130   K 118
A 131   V 119
N 132   L 120
E 133   E 137
V 134   L 138
A 135   G 139
D 136   V 140
TER
END
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 Lukasz Jaroszewski, Ph. D.
 The Burnham Institute,
 10901 North Torrey Pines Road,
 La Jolla, CA 92037, USA
 phone +1 (858) 646 3100 ext. 3553
 fax  +1 (858) 646 3171
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