
PFRMAT AL
TARGET T0096
AUTHOR 6717-9822-3586
METHOD Main features of the approach:
METHOD 1. Threading in the "frozen" energy field of the template results
METHOD    in the alignment of a target sequence on the template. The
METHOD    energy of the obtained structure is evaluated using the same
METHOD    phenomenological potentials applied to Ca atoms.
METHOD 2. The template library consists of the SCOP domains.
METHOD 3. Averaging over both sequence homologs and structural neighbor
METHOD    templates is used in the energy calculations.
MODEL  1
PARENT 1pdn_C
M   1    G   10    
V   2    V   11    
I   3    F   12    
K   4    I   13    
A   5    N   14    
Q   6    G   15    
S   7    R   16    
P   8    P   17    
A   9    L   18    
G  10    P   19    
F  11    N   20    
A  12    N   21    
E  13    I   22    
E  14    R   23    
Y  15    L   24    
I  16    K   25    
I  17    I   26    
E  18    V   27    
S  19    E   28    
I  20    M   29    
W  21    A   30    
N  22    A   31    
N  23    D   32    
R  24    G   33    
F  25    I   34    
P  26    R   35    
P  27    P   36    
L  37    I   39    
S  38    S   40    
E  39    R   41    
L  40    Q   42    
I  41    L   43    
G  42    R   44    
V  43    V   45    
T  44    S   46    
R  45    H   47    
T  46    G   48    
T  47    C   49    
L  48    V   50    
R  49    S   51    
E  50    K   52    
V  51    I   53    
L  52    L   54    
Q  53    N   55    
R  54    R   56    
L  55    Y   57    
A  56    Q   58    
R  57    E   59    
D  58    T   60    
G  59    G   61    
W  60    S   62    
L  61    I   63    
T  62    R   64    
I  63    P   65    
Q  64    G   66    
H  65    V   67    
G  66    I   68    
K  67    G   69    
P  68    G   70    
T  69    S   71    
K  70    K   72    
V  71    P   73    
N  72    R   74    
N  73    I   75    
F  74    A   76    
W  75    T   77    
E  76    P   78    
T  77    E   79    
S  78    I   80    
G  79    E   81    
L  80    N   82    
N  81    R   83    
I  82    I   84    
L  83    E   85    
E  84    E   86    
T  85    Y   87    
L  86    K   88    
A  87    R   89    
R  88    S   90    
L  89    S   91    
D  90    P   92    
H  91    G   93    
E  92    M   94    
S  93    F   95    
V  94    S   96    
P  95    W   97    
Q  96    E   98    
L  97    I   99    
I  98    R  100    
D  99    E  101    
N 100    K  102    
L 101    L  103    
L 102    I  104    
S 103    R  105    
V 104    E  106    
R 105    G  107    
T 106    V  108    
N 107    C  109    
I 108    D  110    
S 109    R  111    
T 110    S  112    
I 111    T  113    
F 112    A  114    
I 113    P  115    
R 114    S  116    
T 115    V  117    
A 116    S  118    
F 117    A  119    
R 118    I  120    
Q 119    S  121    
H 120    R  122    
TER
END


