
PFRMAT AL
TARGET T0096
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1bia
P  32    H  20
A  33    S  21
E  34    G  22
R  35    E  23
E  36    Q  24
L  37    L  25
S  38    G  26
E  39    E  27
L  40    T  28
I  41    L  29
G  42    G  30
V  43    M  31
T  44    S  32
R  45    R  33
T  46    A  34
T  47    A  35
L  48    I  36
R  49    N  37
E  50    K  38
V  51    H  39
L  52    I  40
Q  53    Q  41
R  54    T  42
L  55    L  43
A  56    R  44
R  57    D  45
D  58    W  46
G  59    G  47
W  60    V  48
L  61    V  50
T  62    F  51
I  63    T  52
Q  64    V  53
H  65    P  54
G  66    G  55
K  67    K  56
P  68    G  57
TER
END

