
PFRMAT AL
TARGET T0096
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1cf7_A
A  33    S  16
E  34    R  17
R  35    H  18
E  36    E  19
L  37    K  20
S  38    S  21
I  41    L  22
G  42    G  23
V  43    L  24
T  44    L  25
R  45    T  26
T  46    T  27
T  47    K  28
L  48    F  29
R  49    V  30
E  50    S  31
V  51    L  32
L  52    L  33
Q  53    Q  34
R  54    E  35
A  56    A  36
R  57    K  37
D  58    D  38
G  59    G  39
W  60    V  40
L  61    L  41
T  62    D  42
I  63    L  43
Q  64    K  44
TER
END


