
PFRMAT AL
TARGET T0096
AUTHOR 1205-3016-5241
METHOD Using a database which X'ed out sequence regions within coiled-coils,
METHOD transmembrane, and low entropy, SENSER was able to identify a relationship
METHOD between FadR and iron dependent regulator molecule (1b1bA)
METHOD through recursive searching. An alignment
METHOD was automatically generated with HMMer using profiles
METHOD of the target and pdb families.
MODEL 1
PARENT 1b1bA
V   2    M   1
I   3    N   2
K   4    E   3
A   5    L   4
Q   6    V   5
S   7    D   6
P   8    T   7
A   9    T   8
G  10    E   9
F  11    M  10
A  12    Y  11
E  13    L  12
E  14    R  13
Y  15    T  14
I  16    I  15
I  17    Y  16
E  18    D  17
S  19    L  18
I  20    E  19
W  21    E  20
N  22    E  21
N  23    G  22
R  24    V  23
F  25    T  24
A  33    L  26
E  34    R  27
R  35    A  28
E  36    R  29
L  37    I  30
S  38    A  31
E  39    E  32
L  40    R  33
I  41    L  34
G  42    D  35
V  43    Q  36
T  44    S  37
R  45    G  38
T  46    P  39
T  47    T  40
L  48    V  41
R  49    S  42
E  50    Q  43
V  51    T  44
L  52    V  45
Q  53    S  46
R  54    R  47
L  55    M  48
A  56    E  49
R  57    R  50
D  58    D  51
G  59    G  52
W  60    L  53
L  61    L  54
T  62    R  55
I  63    V  56
Q  64    A  57
H  65    G  58
G  66    D  59
K  67    R  60
P  68    H  61
T  69    L  62
K  70    E  63
V  71    L  64
N  72    T  65
N  73    E  66
E  84    K  67
T  85    G  68
R  88    R  69
L  89    A  70
D  90    L  71
H  91    A  72
E  92    I  73
S  93    A  74
V  94    V  75
P  95    M  76
Q  96    R  77
L  97    K  78
I  98    H  79
D  99    R  80
I 113    L  81
R 114    A  82
T 115    E  83
A 116    R  84
F 117    L  85
L 128    L  86
A 129    V  87
T 130    D  88
A 131    V  89
N 132    I  90
D 136    G  91
H 137    L  92
A 138    P  93
D 139    W  94
A 140    E  95
F 141    E  96
A 142    V  97
E 143    H  98
L 144    A  99
D 145    E 100
Y 146    A 101
N 147    C 102
I 148    R 103
F 149    W 104
R 150    E 105
G 151    H 106
L 152    V 107
A 153    M 108
F 154    S 109
A 155    E 110
S 156    D 111
G 157    V 112
N 158    E 113
P 159    R 114
I 160    R 115
Y 161    L 116
G 162    V 117
L 163    K 118
I 164    V 119
L 165    L 120
N 166    N 121
G 167    N 122
M 168    P 123
K 169    T 124
G 170    T 125
L 171    S 126
Y 172    P 127
T 173    F 128
R 174    G 129
I 175    N 130
G 176    P 131
R 177    I 132
H 178    P 133
Y 179    G 134
F 180    L 135
A 181    V 136
N 182    E 137
P 183    L 138
E 184    G 139
A 185    V 140
TER
END

