
PFRMAT SS
TARGET T0096
AUTHOR 7770-2312-5826
REMARK GROUP NAME: SHESTOPALOV
REMARK GROUP LEADER: Shestopalov Boris V.
REMARK E-mail: shest@mail.cytspb.rssi.ru
METHOD It is suggested to submit up to five models.
METHOD MODEL A is single sequence prediction (SSP),
METHOD obtained by DOUBLET CODE METHOD as model 3
METHOD in CASP3, with slightly modified code tables
METHOD (see CASP3, Shestopalov B.V., submitted).
METHOD MODEL B is obtained from MODEL A by transforming
METHOD ambiguous and undetermined regions into COIL.
METHOD MODEL C is multiple sequence prediction (MSP),
METHOD obtained by application of DOUBLET CODE METHOD
METHOD and PSI-BLAST (Altschul S.F., Madden T.L.,
METHOD Schaffer A.A., Zhang J., Zhang Z, Miller W &
METHOD Lipman D.J. /1997/. Nucl. Acid. Res. v. 25,
METHOD pp 3389-3402). MODEL D is variant of MODEL C,
METHOD obtained using Prodom. MODEL E is MSP
METHOD with more expert intervention.
MODEL  4
REMARK Here MODEL 4 is MODEL A.
REMARK Sequences used in the MODEL: TARGET.
REMARK
M C 0.00
V C 0.00
I C 0.00
K C 0.00
A C 0.00
Q C 1.00
S C 1.00
P C 1.00
A C 1.00
G C 1.00
F C 0.00
A C 0.00
E C 0.00
E C 0.00
Y E 1.00
I E 1.00
I E 1.00
E C 1.00
S C 1.00
I C 0.00
W C 1.00
N C 1.00
N C 1.00
R C 1.00
F C 1.00
P C 1.00
P C 1.00
G C 1.00
T C 1.00
I C 0.00
L C 0.00
P C 0.00
A C 0.00
E C 0.00
R H 1.00
E H 1.00
L H 1.00
S H 1.00
E H 1.00
L H 1.00
I C 0.00
G C 0.00
V C 0.00
T C 0.00
R C 0.00
T C 0.00
T C 0.00
L H 1.00
R H 1.00
E H 1.00
V H 1.00
L H 1.00
Q H 1.00
R H 1.00
L H 1.00
A H 1.00
R H 1.00
D C 0.00
G C 0.00
W C 0.00
L C 0.00
T C 0.00
I C 0.00
Q C 0.00
H C 1.00
G C 1.00
K C 1.00
P C 1.00
T C 1.00
K C 1.00
V C 0.00
N C 1.00
N C 1.00
F C 0.00
W C 0.00
E C 0.00
T C 1.00
S C 1.00
G C 1.00
L C 1.00
N C 0.00
I H 1.00
L H 1.00
E H 1.00
T H 1.00
L H 1.00
A H 1.00
R H 1.00
L C 0.00
D C 0.00
H C 0.00
E C 0.00
S C 0.00
V C 1.00
P C 1.00
Q C 1.00
L C 0.00
I C 0.00
D C 0.00
N C 0.00
L C 0.00
L C 0.00
S C 0.00
V C 0.00
R C 0.00
T C 0.00
N C 0.00
I E 1.00
S E 1.00
T E 1.00
I E 1.00
F E 1.00
I E 1.00
R E 1.00
T E 1.00
A E 1.00
F E 1.00
R C 0.00
Q C 0.00
H C 1.00
P C 1.00
D C 1.00
K C 1.00
A H 1.00
Q H 1.00
E H 1.00
V H 1.00
L H 1.00
A H 1.00
T H 1.00
A H 1.00
N H 1.00
E H 1.00
V C 0.00
A C 0.00
D C 0.00
H C 0.00
A C 0.00
D C 0.00
A C 0.00
F C 0.00
A C 0.00
E C 0.00
L C 0.00
D C 0.00
Y C 0.00
N C 0.00
I C 0.00
F C 0.00
R C 1.00
G C 1.00
L C 0.00
A C 0.00
F C 0.00
A C 0.00
S C 1.00
G C 1.00
N C 1.00
P C 1.00
I C 0.00
Y E 1.00
G E 1.00
L E 1.00
I E 1.00
L E 1.00
N C 1.00
G C 1.00
M C 1.00
K C 1.00
G C 1.00
L C 1.00
Y C 0.00
T E 1.00
R E 1.00
I E 1.00
G C 1.00
R C 1.00
H E 1.00
Y E 1.00
F E 1.00
A C 0.00
N C 1.00
P C 1.00
E C 1.00
A C 0.00
R C 1.00
S C 1.00
L E 1.00
A E 1.00
L E 1.00
G E 1.00
F E 1.00
Y C 0.00
H C 1.00
K C 1.00
L C 0.00
S C 0.00
A C 0.00
L C 0.00
C C 1.00
S C 1.00
E C 1.00
G C 1.00
A C 1.00
H C 1.00
D C 1.00
Q C 1.00
V C 0.00
Y C 0.00
E C 0.00
T C 0.00
V C 0.00
R C 0.00
R C 0.00
Y C 0.00
G C 1.00
H C 1.00
E C 1.00
S C 1.00
G C 1.00
E C 0.00
I H 1.00
W H 1.00
H H 1.00
R H 1.00
M H 1.00
Q H 1.00
K C 1.00
N C 1.00
L C 1.00
P C 1.00
G C 1.00
D C 1.00
L E 1.00
A E 1.00
I E 1.00
Q C 1.00
G C 1.00
R C 1.00
END

