
PFRMAT SS
TARGET T0096
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
M C 0.48
V C 0.36
I C 0.32
K C 0.34
A C 0.31
Q C 0.25
S C 0.19
P H 0.45
A H 0.45
G H 0.46
F H 0.47
A H 0.47
E H 0.48
E H 0.48
Y H 0.48
I H 0.48
I H 0.48
E H 0.47
S H 0.46
I H 0.40
W H 0.36
N H 0.33
N C 0.47
R C 0.43
F C 0.43
P C 0.41
P C 0.43
G C 0.43
T C 0.26
I C 0.33
L C 0.39
P C 0.58
A C 0.78
E H 0.40
R H 0.44
E H 0.45
L H 0.46
S H 0.45
E H 0.45
L H 0.40
I H 0.35
G C 0.47
V C 0.47
T C 0.46
R H 0.38
T H 0.43
T H 0.45
L H 0.46
R H 0.47
E H 0.48
V H 0.48
L H 0.48
Q H 0.48
R H 0.47
L H 0.44
A H 0.38
R H 0.32
D C 0.86
G C 0.51
W C 0.17
L E 0.41
T E 0.39
I E 0.26
Q E 0.13
H C 0.40
G C 0.38
K C 0.31
P C 0.25
T E 0.38
K E 0.41
V E 0.33
N E 0.25
N C 0.21
F C 0.28
W C 0.25
E C 0.23
T C 0.15
S C 0.09
G C 0.06
L C 0.09
N C 0.13
I H 0.03
L H 0.12
E H 0.26
T H 0.33
L H 0.38
A H 0.38
R H 0.36
L H 0.35
D C 0.09
H C 0.09
E C 0.11
S C 0.19
V C 0.26
P H 0.40
Q H 0.43
L H 0.46
I H 0.47
D H 0.47
N H 0.48
L H 0.48
L H 0.48
S H 0.48
V H 0.48
R H 0.47
T H 0.46
N H 0.45
I H 0.46
S H 0.47
T H 0.47
I H 0.47
F H 0.47
I H 0.48
R H 0.47
T H 0.46
A H 0.45
F H 0.37
R H 0.28
Q H 0.19
H C 0.47
P C 0.92
D H 0.46
K H 0.47
A H 0.47
Q H 0.47
E H 0.48
V H 0.48
L H 0.48
A H 0.48
T H 0.48
A H 0.47
N H 0.46
E H 0.44
V H 0.46
A H 0.48
D C 0.09
H C 0.08
A C 0.06
D H 0.18
A H 0.29
F H 0.37
A H 0.42
E H 0.45
L H 0.45
D H 0.47
Y H 0.48
N H 0.48
I H 0.48
F H 0.48
R H 0.48
G H 0.47
L H 0.46
A H 0.45
F H 0.38
A H 0.31
S C 0.20
G C 0.44
N C 0.68
P H 0.46
I H 0.47
Y H 0.47
G H 0.47
L H 0.47
I H 0.48
L H 0.48
N H 0.48
G H 0.48
M H 0.48
K H 0.48
G H 0.48
L H 0.48
Y H 0.48
T H 0.48
R H 0.46
I H 0.66
G H 0.76
R H 0.79
H H 0.73
Y H 0.67
F C 0.05
A C 0.19
N C 0.23
P C 0.15
E C 0.13
A C 0.11
R H 0.44
S H 0.44
L H 0.46
A H 0.47
L H 0.47
G H 0.48
F H 0.48
Y H 0.48
H H 0.48
K H 0.48
L H 0.48
S H 0.48
A H 0.47
L H 0.47
C H 0.45
S H 0.40
E H 0.34
G C 0.86
A C 0.48
H H 0.47
D H 0.48
Q H 0.47
V H 0.47
Y H 0.47
E H 0.48
T H 0.48
V H 0.48
R H 0.48
R H 0.48
Y H 0.48
G H 0.48
H H 0.48
E H 0.48
S H 0.48
G H 0.48
E H 0.48
I H 0.48
W H 0.48
H H 0.47
R H 0.47
M H 0.43
Q H 0.38
K H 0.34
N H 0.30
L C 0.43
P C 0.33
G C 0.20
D C 0.07
L C 0.05
A C 0.06
I C 0.08
Q C 0.25
G C 0.36
R C 0.47
END

