
PFRMAT AL
TARGET T0097
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1a0b
G 123    L 663
C 124    D 664
L 125    I 665
P 126    P 666
A 127    M 667
Y 128    L 668
D 129    E 669
A 130    Q 670
L 131    Y 671
A 132    L 672
G 133    E 673
Q 134    L 674
F 135    V 675
I 136    G 676
E 137    P 677
A 138    K 678
S 139    L 679
S 140    I 680
R 141    T 681
E 142    D 682
A 143    G 683
R 144    L 684
Q 145    A 685
A 146    V 686
I 147    F 687
L 148    E 688
K 149    K 689
Q 150    M 690
G 151    M 691
Q 152    P 692
D 153    G 693
G 154    Y 694
L 155    V 695
S 156    S 696
G 157    V 697
V 158    L 698
K 159    E 699
E 160    S 700
T 161    N 701
D 162    L 702
K 163    T 703
K 164    A 704
W 165    Q 705
A 166    D 706
S 167    K 707
Q 168    K 708
Y 169    G 709
L 170    I 710
K 171    V 711
I 172    E 712
M 173    E 713
G 174    G 714
K 175    H 715
I 176    K 716
L 177    I 717
D 178    K 718
Q 179    G 719
G 180    A 720
E 181    G 722
D 182    S 723
F 183    V 724
P 184    G 725
A 185    L 726
S 186    R 727
E 187    H 728
L 188    L 729
A 189    Q 730
R 190    Q 731
I 191    L 732
S 192    G 733
K 193    Q 734
L 194    Q 735
I 195    I 736
E 196    Q 737
N 197    S 738
K 198    P 739
M 199    W 744
S 200    E 745
E 201    D 746
G 202    N 747
K 203    V 748
K 204    G 749
E 205    E 750
E 206    W 751
L 207    I 752
Q 208    E 753
R 209    E 754
S 210    M 755
L 211    K 756
N 212    E 757
I 213    E 758
L 214    W 759
T 215    R 760
A 216    H 761
F 217    D 762
R 218    V 763
K 219    E 764
K 220    V 765
G 221    L 766
A 222    K 767
E 223    A 768
K 224    V 770
E 225    A 771
E 226    K 772
TER
END


