
PFRMAT AL
TARGET T0098
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=4.35 
REMARK CONFIDENCE: GUESS     (50% confidence [ ZSCORE>=3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1aln_1
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  2
PARENT 1aln
D 139     A    10
N 140     Q    11
K 141     L    12
P 142     A    13
K 143     D    14
N 144     N    15
L 145     L    16
D 146     Q    17
A 147     S    18
S 148     A    19
I 149     L    20
T 150     E    21
S 151     P    22
I 152     I    23
I 153     L    24
H 154     A    25
E 155     D    26
I 156     K    27
G 157     Y    28
V 158     F    29
P 159     P    30
A 160     A    31
H 161     L    32
I 162     L    33
K 163     T    34
G 164     G    35
Y 165     E    36
L 166     Q    37
Y 167     V    38
L 168     L    41
R 169     K    42
E 170     S    43
A 171     A    44
I 172     T    45
A 173     A    51
M 174     L    52
V 175     A    53
Y 176     F    54
H 177     A    55
D 178     L    56
I 179     L    57
E 180     P    58
L 181     L    59
L 182     A    60
G 183     A    61
S 184     A    62
I 185     C    63
T 186     A    64
K 187     R    65
V 188     T    66
L 189     P    67
Y 190     L    68
P 191     S    69
D 192     N    70
I 193     I    76
A 194     A    77
K 195     R    78
K 196     F    92
Y 197     I    93
N 198     G    94
T 199     A    95
T 200     T    96
A 201     M    97
S 202     Q    98
R 203     Q    99
V 204     T   100
E 205     V   101
R 206     H   102
A 207     A   103
I 208     E   104
R 209     Q   105
H 210     S   106
A 211     A   107
I 212     I   108
E 213     S   109
V 214     H   110
A 215     A   111
W 216     W   112
S 217     L   113
R 218     S   114
G 219     G   115
N 220     E   116
S 225     K   117
S 226     A   118
L 227     L   119
F 228     A   120
G 229     A   121
Y 230     I   122
T 231     T   123
V 232     V   124
S 233     N   125
V 234     Y   126
S 235     T   127
K 236     P   128
A 237     C   129
K 238     G   130
P 239     H   131
T 240     C   132
N 241     R   133
E 243     Q   134
F 244     F   135
I 245     M   136
A 246     N   137
M 247     E   138
V 248     L   139
A 249     N   140
D 250     S   141
K 251     G   142
L 252     L   143
R 253     D   144
L 254     L   145
E 255     R   146
H 256     I   147
K 257     H   148
A 258     L   149
S 259     P   150
TER
END

