
PFRMAT AL
TARGET T0098
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=3.80 
REMARK CONFIDENCE: GUESS     (50% confidence [ ZSCORE>=3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd2arca
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  3
PARENT 2arc_A
D 139     D     7
N 140     P     8
K 141     L     9
P 142     N    16
K 143     A    17
N 144     H    18
L 145     L    19
D 146     V    20
A 147     A    21
S 148     G    22
I 149     L    23
T 150     T    24
S 151     P    25
I 152     I    26
I 153     E    27
H 154     F    34
E 155     F    35
I 156     I    36
G 157     D    37
V 158     R    38
P 159     P    39
A 160     L    40
H 161     G    41
I 162     M    42
K 163     K    43
G 164     G    44
Y 165     Y    45
L 166     L    49
Y 167     T    50
L 168     I    51
R 169     R    52
E 170     G    53
A 171     Q    54
I 172     G    55
A 173     V    56
M 174     V    57
V 175     K    58
Y 176     N    59
H 177     Q    60
D 178     G    61
I 179     R    62
E 180     E    63
L 181     F    64
L 182     V    65
G 183     G    77
S 184     E    78
I 185     I    79
T 186     H    80
K 187     H    81
V 188     Y    82
L 189     G    83
Y 190     R    84
P 191     H    85
D 192     P    86
I 193     E    87
A 194     A    88
K 195     R    89
K 196     E    90
Y 197     W    91
N 198     Y    92
T 199     H    93
T 200     Q    94
A 201     W    95
S 202     V    96
R 203     Y    97
V 204     F    98
E 205     R    99
R 206     P   100
A 207     R   101
I 208     A   102
R 209     Y   103
H 210     W   104
A 211     H   105
I 212     E   106
E 213     W   107
V 214     L   108
A 215     N   109
W 216     W   110
S 217     D   123
R 218     E   124
G 219     A   125
N 220     H   126
L 221     Q   127
E 222     P   128
S 223     H   129
I 224     F   130
S 225     S   131
S 226     D   132
L 227     L   133
F 228     F   134
G 229     G   135
Y 230     Q   136
T 231     I   137
V 232     I   138
S 233     N   139
V 234     A   140
S 235     G   141
K 236     Q   142
A 237     G   143
K 238     E   144
P 239     G   145
T 240     R   146
N 241     Y   147
S 242     S   148
E 243     E   149
F 244     L   150
I 245     L   151
A 246     A   152
M 247     I   153
V 248     L   155
A 249     L   156
D 250     E   157
K 251     Q   158
L 252     L   159
R 253     L   160
L 254     L   161
E 255     R   162
H 256     R   163
K 257     M   164
A 258     E   165
S 259     A   166
TER
END

