
PFRMAT AL
TARGET T0098
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=3.20 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1cem
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  5
PARENT 1cem
D 139     S   170
N 140     S   171
K 141     G   172
P 142     A   173
K 143     I   174
N 144     N   175
L 145     Y   176
D 146     G   177
A 147     Q   178
S 148     E   179
I 149     A   180
T 150     R   181
S 151     T   182
I 152     L   183
I 153     I   184
H 154     N   185
E 155     N   186
I 156     L   187
G 157     Y   188
V 158     A   217
P 159     P   218
A 160     A   219
H 161     W   220
I 162     Y   221
K 163     K   222
G 164     V   223
Y 165     Y   224
L 166     A   225
Y 167     Q   226
L 168     Y   227
R 169     T   228
E 170     R   232
A 171     W   233
I 172     N   234
A 173     Q   235
M 174     V   236
V 175     A   237
Y 176     D   238
H 177     K   239
D 178     C   240
I 179     Y   241
E 180     Q   242
L 181     I   243
L 182     V   244
G 183     E   245
S 184     E   246
I 185     V   247
T 186     K   248
K 187     K   249
V 188     Y   250
L 189     L   256
Y 190     V   257
P 191     P   258
D 192     D   259
I 193     W   260
A 194     C   261
K 195     T   262
K 196     A   263
Y 197     S   264
N 198     G   265
T 199     T   266
T 200     P   267
A 201     A   268
S 202     S   269
R 203     G   270
V 204     T   280
E 205     R   281
R 206     Y   282
A 207     G   283
I 208     W   284
R 209     R   285
H 210     T   286
A 211     A   287
I 212     V   288
E 213     D   289
V 214     Y   290
A 215     S   291
W 216     W   292
S 217     A   298
R 218     K   299
G 219     A   300
N 220     N   301
L 221     C   302
E 222     D   303
S 223     M   304
I 224     L   305
S 225     T   306
S 226     K   307
L 227     F   308
F 228     F   309
G 229     G   320
Y 230     Y   321
T 231     T   322
V 232     I   323
S 233     Q   324
V 234     G   325
S 235     S   326
K 236     K   327
A 237     I   328
K 238     S   329
P 239     N   330
T 240     N   331
N 241     N   333
S 242     A   334
E 243     S   335
F 244     F   336
I 245     I   337
A 246     G   338
M 247     P   339
V 248     V   340
A 249     A   341
D 250     A   342
K 251     A   343
L 252     S   344
R 253     M   345
L 254     T   346
E 255     G   347
H 256     Y   348
K 257     D   349
A 258     L   350
S 259     N   351
TER
END

