
PFRMAT AL
TARGET T0098
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1nsg_B
I  156 V 2019
G  157 A 2020
V  158 I 2021
P  159 L 2022
A  160 W 2023
H  161 H 2024
I  162 E 2025
K  163 M 2026
G  164 W 2027
Y  165 H 2028
L  166 E 2029
Y  167 G 2030
L  168 L 2031
R  169 E 2032
E  170 E 2033
A  171 A 2034
I  172 S 2035
A  173 R 2036
M  174 L 2037
V  175 Y 2038
Y  176 F 2039
H  177 G 2040
D  178 E 2041
I  179 V 2044
E  180 K 2045
L  181 G 2046
L  182 M 2047
G  183 F 2048
S  184 E 2049
I  185 V 2050
T  186 L 2051
K  187 E 2052
V  188 P 2053
L  189 L 2054
Y  190 H 2055
D  192 A 2056
I  193 M 2057
A  194 M 2058
K  195 E 2059
K  196 R 2060
Y  197 G 2061
N  198 P 2062
T  199 Q 2063
T  200 T 2064
A  201 L 2065
S  202 K 2066
R  203 E 2067
V  204 T 2068
E  205 S 2069
R  206 R 2076
A  207 D 2077
I  208 L 2078
R  209 M 2079
H  210 E 2080
A  211 A 2081
I  212 Q 2082
E  213 E 2083
V  214 K 2087
A  215 Y 2088
W  216 M 2089
S  217 K 2090
R  218 S 2091
G  219 G 2092
N  220 N 2093
L  221 V 2094
E  222 K 2095
S  223 D 2096
I  224 L 2097
S  225 T 2098
S  226 Q 2099
L  227 A 2100
F  228 W 2101
G  229 D 2102
Y  230 Y 2105
T  231 H 2106
V  232 V 2107
S  233 R 2110
V  234 I 2111
S  235 S 2112
TER
END

