
PFRMAT AL
TARGET T0098
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1aoi_D
D  139 K 24
N  140 T 29
K  141 R 30
P  142 K 31
K  143 E 32
N  144 S 33
L  145 Y 34
D  146 A 35
A  147 I 36
S  148 Y 37
I  149 V 38
T  150 Y 39
S  151 K 40
I  152 V 41
I  153 L 42
H  154 K 43
E  155 Q 44
I  156 V 45
G  157 H 46
V  158 P 47
P  159 D 48
A  160 T 49
H  161 G 50
I  162 I 51
K  163 K 54
G  164 A 55
Y  165 M 56
L  166 S 57
Y  167 I 58
L  168 M 59
R  169 N 60
E  170 S 61
A  171 F 62
I  172 V 63
A  173 N 64
M  174 D 65
V  175 V 66
Y  176 F 67
H  177 E 68
D  178 R 69
I  179 I 70
L  182 A 71
G  183 G 72
S  184 E 73
I  185 A 74
T  186 S 75
K  187 R 76
V  188 L 77
L  189 A 78
Y  190 H 79
A  194 Y 80
K  195 N 81
K  196 K 82
Y  197 R 83
N  198 S 84
T  199 T 85
T  200 I 86
A  201 T 87
S  202 S 88
R  203 R 89
V  204 I 91
E  205 Q 92
R  206 T 93
A  207 A 94
I  208 V 95
R  209 R 96
H  210 H 106
A  211 A 107
I  212 V 108
E  213 S 109
E  222 E 110
S  223 G 111
I  224 T 112
S  225 K 113
S  226 A 114
L  227 V 115
F  228 T 116
G  229 K 117
Y  230 Y 118
T  231 T 119
V  232 S 120
S  233 A 121
V  234 K 122
TER
END

