
PFRMAT AL
TARGET T0098
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1b79_A
R 218    Q  93
G 219    G  94
N 220    Q  95
L 221    L  96
E 222    D  97
S 223    S  98
I 224    V  99
S 225    G 100
S 226    G 101
F 228    F 102
G 229    A 103
Y 230    Y 104
T 231    L 105
V 232    A 106
S 233    E 107
V 234    L 108
S 235    S 109
K 236    K 110
A 237    N 111
K 238    T 112
P 239    P 113
T 240    S 114
N 241    A 115
S 242    A 116
E 243    N 117
I 245    I 118
A 246    S 119
M 247    A 120
V 248    Y 121
A 249    A 122
D 250    D 123
K 251    I 124
L 252    V 125
R 253    R 126
L 254    E 127
TER
END


