
PFRMAT AL
TARGET T0099
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.55 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1orc
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  3
PARENT 1orc
E   1     Q     3
F   2     R     4
I   3     I     5
A   4     T     6
I   5     L     7
Y   6     K     8
D   7     D     9
Y   8     Y    10
K   9     A    11
A  10     M    12
E  11     R    13
T  12     T    19
E  13     A    20
E  14     K    21
D  15     D    22
L  16     L    23
T  17     A    33
I  18     I    34
K  19     H    35
K  20     A    36
G  21     G    37
E  22     R    38
K  23     K    39
L  24     I    40
E  25     F    41
I  26     L    42
I  27     T    43
E  28     I    44
K  29     N    45
E  30     A    46
G  31     D    47
D  32     G    48
W  33     S    49
W  34     V    50
K  35     Y    51
A  36     A    52
K  37     E    53
A  38     E    54
I  39     V    55
G  40     K    56
S  41     D   56A
G  42     G   56B
E  43     E   56C
I  44     V   56D
G  45     K   56E
Y  46     P    57
I  47     F    58
P  48     P    59
A  49     S    60
N  50     N    61
TER
END

