
PFRMAT AL
TARGET T0099
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1fmk
E    1 M 82
F    2 F 86
I    3 V 87
A    4 A 88
I    5 L 89
Y    6 Y 90
D    7 D 91
Y    8 Y 92
K    9 E 93
A   10 S 94
E   11 R 95
T   12 T 96
E   13 E 97
E   14 T 98
D   15 D 99
L   16 L 100
T   17 S 101
I   18 F 102
K   19 K 103
K   20 K 104
G   21 G 105
E   22 E 106
K   23 R 107
L   24 L 108
E   25 Q 109
I   26 I 110
I   27 V 111
E   28 N 112
K   29 N 113
E   30 E 115
G   31 G 116
D   32 D 117
W   33 W 118
W   34 W 119
K   35 L 120
A   36 A 121
K   37 H 122
A   38 S 123
I   39 L 124
G   40 S 125
S   41 T 126
G   42 G 127
E   43 Q 128
I   44 T 129
G   45 G 130
Y   46 Y 131
I   47 I 132
P   48 P 133
A   49 S 134
N   50 N 135
Y   51 Y 136
I   52 V 137
A   53 A 138
A   54 P 139
A   55 S 140
E   56 D 141
TER
END

