
PFRMAT AL
TARGET T0099
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1lck_A
E    1 D 63
F    2 V 66
I    3 I 67
A    4 A 68
I    5 L 69
Y    6 H 70
D    7 S 71
Y    8 Y 72
K    9 E 73
A   10 P 74
E   11 S 75
T   12 H 76
E   13 D 77
E   14 G 78
D   15 D 79
L   16 L 80
T   17 G 81
I   18 F 82
K   19 E 83
K   20 K 84
G   21 G 85
E   22 E 86
K   23 Q 87
L   24 L 88
E   25 R 89
I   26 I 90
I   27 L 91
E   28 E 92
K   29 Q 93
E   30 S 94
G   31 G 95
D   32 E 96
W   33 W 97
W   34 W 98
K   35 K 99
A   36 A 100
K   37 Q 101
A   38 S 102
I   39 L 103
G   40 T 104
S   41 T 105
G   42 G 106
E   43 Q 107
I   44 E 108
G   45 G 109
Y   46 F 110
I   47 I 111
P   48 P 112
A   49 F 113
N   50 N 114
Y   51 F 115
I   52 V 116
TER
END

