
PFRMAT AL
TARGET T0099
AUTHOR 6305-9733-7289
REMARK Similar to 1FYNA (chain: A).
METHOD PSI-BLAST (Altschul et al., Nucl. Acids Res. 25, 3389-3402, 1997)
METHOD (-h 0.0005 -j 20 -F T) and iterative SCANPS
METHOD (Barton et al., 2000, unpublished) were run against a combined search
METHOD set comprising the SWALL, PDB and ENSEMBL sequence databases. From this 1fyn
METHOD (chain: A) was identified as a possible homologue. The 1fyn (chain: A) PDB sequence
METHOD was aligned against a sequence profile, created by JPRED (Cuff & Barton,
METHOD Proteins 40, 502-511, 2000) in a secondary structure prediction run for
METHOD the target sequence. This alignment was edited by hand to produce the final
METHOD sequence to structure alignment.
MODEL  2
PARENT 1fyn_A
E 1 L A86
F 2 F A87
I 3 V A88
A 4 A A89
I 5 L A90
Y 6 Y A91
D 7 D A92
Y 8 Y A93
K 9 E A94
A 10 A A95
E 11 R A96
T 12 T A97
E 13 E A98
E 14 D A99
D 15 D A100
L 16 L A101
T 17 S A102
I 18 F A103
K 19 H A104
K 20 K A105
G 21 G A106
E 22 E A107
K 23 K A108
L 24 F A109
E 25 Q A110
I 26 I A111
I 27 L A112
E 28 N A113
G 31 G A117
D 32 D A118
W 33 W A119
W 34 W A120
K 35 E A121
A 36 A A122
K 37 R A123
A 38 S A124
I 39 L A125
G 40 T A126
S 41 T A127
G 42 G A128
E 43 E A129
I 44 T A130
G 45 G A131
Y 46 Y A132
I 47 I A133
P 48 P A134
A 49 S A135
N 50 N A136
Y 51 Y A137
I 52 V A138
A 53 A A139
TER
END


