
PFRMAT AL
TARGET T0099
AUTHOR 2738-1781-2815
REMARK
METHOD 1. The related sequences are selected using FASTA
METHOD and Psi-Blast programs. The set of closest by sequence
METHOD homologues from PDB library is chosen.
METHOD 2. Pairwise structure comparison on the selected
METHOD PDB structures (p 1.) is performed to find "core"
METHOD (conservative fragments of folds). This analysis is
METHOD based on the results from LGA program:
METHOD http://PredictionCenter.llnl.gov/local/lga/lga.html
METHOD 3. The best alignment is selected by manual inspection.
METHOD
METHOD Model 2 is constructed as an alignment to 1lck_A
METHOD
MODEL 2
PARENT 1lck_A
E     1   L    65
F     2   V    66
I     3   I    67
A     4   A    68
I     5   L    69
Y     6   H    70
D     7   S    71
Y     8   Y    72
K     9   E    73
A    10   P    74
E    11   S    75
T    12   H    76
E    13   D    77
E    14   G    78
D    15   D    79
L    16   L    80
T    17   G    81
I    18   F    82
K    19   E    83
K    20   K    84
G    21   G    85
E    22   E    86
K    23   Q    87
L    24   L    88
E    25   R    89
I    26   I    90
I    27   L    91
E    28   E    92
K    29   Q    93
E    30   S    94
G    31   G    95
D    32   E    96
W    33   W    97
W    34   W    98
K    35   K    99
A    36   A   100
K    37   Q   101
A    38   S   102
I    39   L   103
G    40   T   104
S    41   T   105
G    42   G   106
E    43   Q   107
I    44   E   108
G    45   G   109
Y    46   F   110
I    47   I   111
P    48   P   112
A    49   F   113
N    50   N   114
Y    51   F   115
I    52   V   116
A    53   A   117
A    54   K   118
A    55   A   119
E    56   N   120
TER
END


