
PFRMAT AL
TARGET T0099
AUTHOR 8971-8833-9593
METHOD FFAS (http://bioinformatics.burnham-inst.org/FFAS/)
METHOD Fold & Function Assignment System A profile-profile alignment method.
METHOD 1) PSI-Blast is used to collect homologs
METHOD 2) The sequences of homologs are translated into a profile
METHOD    [The translation is not based on PSI-Blast approach]
METHOD 3) Translated profile is aligned against a profile database
MODEL  2
PARENT 1ark
E 1 I 5
F 2 F 6
I 3 R 7
A 4 A 8
I 5 M 9
Y 6 Y 10
D 7 D 11
Y 8 Y 12
K 9 M 13
A 10 A 14
E 11 A 15
T 12 D 16
E 13 A 17
E 14 D 18
D 15 E 19
L 16 V 20
T 17 S 21
I 18 F 22
K 19 K 23
K 20 D 24
G 21 G 25
E 22 D 26
K 23 A 27
L 24 I 28
E 25 I 29
I 26 N 30
I 27 V 31
E 28 Q 32
K 29 A 33
E 30 D 35
G 31 E 36
D 32 G 37
W 33 W 38
W 34 M 39
K 35 Y 40
A 36 G 41
K 37 T 42
A 38 V 43
I 39 Q 44
G 40 R 45
S 41 T 46
G 42 G 47
E 43 R 48
I 44 T 49
G 45 G 50
Y 46 M 51
I 47 L 52
P 48 P 53
A 49 A 54
N 50 N 55
Y 51 Y 56
I 52 V 57
A 53 E 58
A 54 A 59
A 55 I 60
TER
END

