
PFRMAT AL
TARGET T0099
AUTHOR 8971-8833-9593
METHOD FFAS (http://bioinformatics.burnham-inst.org/FFAS/)
METHOD Fold & Function Assignment System A profile-profile alignment method.
METHOD 1) PSI-Blast is used to collect homologs
METHOD 2) The sequences of homologs are translated into a profile
METHOD    [The translation is not based on PSI-Blast approach]
METHOD 3) Translated profile is aligned against a profile database
MODEL  5
PARENT 1gfc
F 2 V 5
I 3 Q 6
A 4 A 7
I 5 L 8
Y 6 F 9
D 7 D 10
Y 8 F 11
K 9 D 12
A 10 P 13
E 11 Q 14
T 12 E 15
E 13 D 16
E 14 G 17
D 15 E 18
L 16 L 19
T 17 G 20
I 18 F 21
K 19 R 22
K 20 R 23
G 21 G 24
E 22 D 25
K 23 F 26
L 24 I 27
E 25 H 28
I 26 V 29
I 27 M 30
E 28 D 31
K 29 N 32
E 30 D 34
G 31 P 35
D 32 N 36
W 33 W 37
W 34 W 38
K 35 K 39
A 36 G 40
K 37 A 41
A 38 C 42
S 41 H 43
G 42 G 44
E 43 Q 45
I 44 T 46
G 45 G 47
Y 46 M 48
I 47 F 49
P 48 P 50
A 49 R 51
N 50 N 52
Y 51 Y 53
I 52 V 54
A 53 T 55
A 54 P 56
A 55 V 57
E 56 N 58
TER
END

