
PFRMAT SS
TARGET T0099
AUTHOR 6153-6797-7392
METHOD The nearest neighbour method based on the FFAS
METHOD profile-profile matching algorithm.
METHOD 
METHOD The FFAS sequence profile method is described in:
METHOD 
METHOD Rychlewski, L., Jaroszewski, L., Li, W. & Godzik, A. (2000). 
METHOD "Comparison of sequence profiles. Strategies for structural
METHOD predictions using sequence information". Protein Science 9, 232-241 
METHOD 
METHOD The prototype of the secondary structure prediction
METHOD method is described in:
METHOD Rychlewski, L., and Godzik. A, (1997) 
METHOD "Secondary structure prediction using segment similarity", 
METHOD Protein Eng 10, 1143-1153 
METHOD 
METHOD The detailed description of the method will be a subject
METHOD of the separate publication.
METHOD 
MODEL 1
E C 0.33
F E 0.44
I E 0.56
A E 0.56
I E 0.33
Y C 0.44
D C 0.56
Y C 0.56
K C 0.56
A C 0.56
E C 0.67
T C 0.78
E C 0.78
E C 0.67
D C 0.67
L C 0.56
T C 0.56
I C 0.56
K C 0.67
K C 0.89
G C 1.00
E C 0.89
K E 0.67
L E 0.89
E E 0.89
I E 0.89
I E 0.67
E E 0.56
K C 0.67
E C 0.78
G C 0.89
D C 0.89
W C 0.56
W E 0.56
K E 0.56
A E 0.56
K E 0.67
A E 0.67
I C 0.78
G C 0.89
S C 1.00
G C 1.00
E E 0.78
I E 0.78
G E 0.78
Y E 0.78
I E 0.67
P C 0.56
A C 0.78
N C 0.56
Y C 0.56
I E 0.67
A E 0.67
A E 0.44
A E 0.67
E C 0.78
END


