
PFRMAT TS
TARGET T0099
AUTHOR 3670-4530-6947
REMARK 
REMARK Prediction date: Friday June 30, 2000
REMARK Group name: UCSC-compbio  SAM-T2K
REMARK Authors (alphabetically): Christian Barrett, Melissa Cline, Mark Diekhans, Leslie Grate,
REMARK 	 Rachel Karchin, Kevin Karplus, Richard Hughey, I. Saira Mian, 
REMARK 	 and Spencer Tu
REMARK University of California, Santa Cruz
REMARK 
METHOD Overview
METHOD 
METHOD Fold recognition for this target was performed using the SAM-T99 and
METHOD SAM-T2K methods (which are similar to SAM_T98 [3]) using SAM version
METHOD 3.1 [1], a refinement of the methods developed by this group for CASP3
METHOD [7]).  These methods attempt to find and multiply align a set of
METHOD homologs to a given sequence, then create an HMM from that multiple
METHOD alignment.
METHOD 
METHOD First, a set of sequence weights is determined from the alignment.  Next, 
METHOD Modelfromalign is used to build the model from the alignment and the 
METHOD sequence weights.  Finally, hmmscore performs a local, all-paths scoring 
METHOD of the sequences, using a reversed-sequence normalization feature.
METHOD 
METHOD The weighting method, detailed in publications [3,4], uses Dirichlet
METHOD mixtures [6] to regularize the counts and an entropy method to set the
METHOD final weights.
METHOD 
METHOD We are currently using SAM-T2K to generate the HMM from the target
METHOD sequence, but are still using the library of SAM-T99 template HMMs,
METHOD since the SAM-T2K method is not yet fully stable.
METHOD 
METHOD Alignment generation
METHOD 
METHOD The initial step uses WU-BLASTP to search NRP to get nested sets of
METHOD possible homologs---from a set of very similar sequences to a set of
METHOD possibly related sequences.
METHOD 
METHOD The method then uses multiple iterations of a selection, training, and 
METHOD alignment procedure.  Each iteration involves an initial alignment, a set 
METHOD of search sequences, a threshold value, and a transition regularizer. 
METHOD 
METHOD The first iteration uses a single sequence (or seed alignment) as the
METHOD initial alignment and the most similar sequences found by BLASTP are
METHOD used as the search set.  The threshold is set very strictly, so that
METHOD only good matches to the sequence are considered.  
METHOD 
METHOD On subsequent iterations the input alignment is the output from the
METHOD previous iteration, the search set is a larger set of possible
METHOD homologs found by BLASTP, and the thresholds are gradually loosened.
METHOD 
METHOD The HMM used for scoring and aligning sequences is built from a
METHOD multiple alignment using the w0.5 script, which aims to get an average
METHOD of 0.5 bits of information per column of the alignment.
METHOD 
METHOD All PDB protein sequences (including, unfortunately, theoretical
METHOD models) are scored with the HMM built from the target alignment, and
METHOD all the template HMMs in our SAM-T99 library (about 3760) are used to
METHOD score the target sequence.
METHOD 
METHOD High-scoring hits in either direction are examined by hand, as are
METHOD other potential targets found by public servers (see the CAFASP
METHOD experiment) or by functional considerations.
METHOD 
METHOD The final alignment is selected from among the various alignments
METHOD obtained by varying whether the template model or the target model is
METHOD used for the alignment, whether local or global alignment is chosen,
METHOD and various other parameters.  In some cases parts of different
METHOD alignments are combined.
METHOD 
METHOD 
METHOD References
METHOD [1] R. Hughey and A. Krogh, CABIOS 12(2): 95-107, 1996.
METHOD     http://www.cse.ucsc.edu/research/compbio/sam.html.  
METHOD [2] K. Karplus, K. Sjolander, C. Barrett, M. Cline, D. Haussler, R.
METHOD     Hughey, L. Holm, and C. Sander, Proteins: Structure, Function, and 
METHOD     Genetics, Suppl. 1, 134-9, 1997.
METHOD [3] K. Karplus, C. Barrett, and R. Hughey, Technical Report UCSC-CRL-98-06,
METHOD     Department of Computer Engineering, Univ. of California, Santa Cruz, 1998.
METHOD [4] J. Park, K. Karplus, C. Barrett, R. Hughey, D. Haussler, T. Hubbard,
METHOD     and C. Chothia, http://cyrah.med.harvard.edu/~jong/assess_final.html, 1998.
METHOD [5] S. Henikoff and J. C. Henikoff, JMB, vol 243, pp 574-578, Nov 1994.
METHOD [6] K. Sjolander, K. Karplus, M. P. Brown, R. Hughey, A. Krogh, I. S.
METHOD    Mian, and D. Haussler, CABIOS 12(4):327-345, 1996.
METHOD [7] Karplus, K; Barrett, C; Cline, M; Diekhans, M; Grate, L; Hughey, R. 
METHOD     Predicting protein structure using only sequence information.
METHOD     Proteins, 1999, Suppl 3:121-5.
METHOD 
METHOD 
METHOD From the alignment produced by the method above, we ran the sidechain
METHOD addition program SCWRL to generate the all atom model that is our
METHOD prediction.
METHOD
MODEL 1
PARENT 5hck
ATOM      1  N   GLU     1      10.125   0.753   1.428  1.00  0.00
ATOM      2  CA  GLU     1       8.974   1.610   1.856  1.00  0.00
ATOM      3  CB  GLU     1       9.416   2.602   2.934  1.00  0.00
ATOM      4  CG  GLU     1       8.274   3.375   3.572  1.00  0.00
ATOM      5  CD  GLU     1       8.748   4.338   4.642  1.00  0.00
ATOM      6  OE1 GLU     1       9.971   4.397   4.889  1.00  0.00
ATOM      7  OE2 GLU     1       7.897   5.035   5.234  1.00  0.00
ATOM      8  O   GLU     1       9.178   2.934  -0.119  1.00  0.00
ATOM      9  C   GLU     1       8.434   2.392   0.668  1.00  0.00
ATOM     10  N   PHE     2       7.139   2.446   0.540  1.00  0.00
ATOM     11  CA  PHE     2       6.521   3.189  -0.591  1.00  0.00
ATOM     12  CB  PHE     2       5.648   2.256  -1.432  1.00  0.00
ATOM     13  CG  PHE     2       4.498   1.655  -0.674  1.00  0.00
ATOM     14  CD1 PHE     2       3.266   2.285  -0.644  1.00  0.00
ATOM     15  CD2 PHE     2       4.648   0.461   0.008  1.00  0.00
ATOM     16  CE1 PHE     2       2.208   1.733   0.053  1.00  0.00
ATOM     17  CE2 PHE     2       3.590  -0.091   0.705  1.00  0.00
ATOM     18  CZ  PHE     2       2.374   0.539   0.729  1.00  0.00
ATOM     19  O   PHE     2       5.359   4.394   1.129  1.00  0.00
ATOM     20  C   PHE     2       5.648   4.327  -0.053  1.00  0.00
ATOM     21  N   ILE     3       5.215   5.210  -0.913  1.00  0.00
ATOM     22  CA  ILE     3       4.346   6.331  -0.462  1.00  0.00
ATOM     23  CB  ILE     3       5.055   7.690  -0.611  1.00  0.00
ATOM     24  CG1 ILE     3       6.332   7.720   0.231  1.00  0.00
ATOM     25  CG2 ILE     3       4.146   8.818  -0.149  1.00  0.00
ATOM     26  CD1 ILE     3       7.211   8.923  -0.036  1.00  0.00
ATOM     27  O   ILE     3       3.126   6.425  -2.526  1.00  0.00
ATOM     28  C   ILE     3       3.071   6.347  -1.311  1.00  0.00
ATOM     29  N   ALA     4       1.927   6.262  -0.686  1.00  0.00
ATOM     30  CA  ALA     4       0.655   6.276  -1.462  1.00  0.00
ATOM     31  CB  ALA     4      -0.535   6.091  -0.533  1.00  0.00
ATOM     32  O   ALA     4       0.439   8.652  -1.550  1.00  0.00
ATOM     33  C   ALA     4       0.526   7.611  -2.181  1.00  0.00
ATOM     34  N   ILE     5       0.523   7.584  -3.493  1.00  0.00
ATOM     35  CA  ILE     5       0.421   8.848  -4.280  1.00  0.00
ATOM     36  CB  ILE     5       1.229   8.765  -5.588  1.00  0.00
ATOM     37  CG1 ILE     5       0.651   7.685  -6.505  1.00  0.00
ATOM     38  CG2 ILE     5       2.682   8.422  -5.296  1.00  0.00
ATOM     39  CD1 ILE     5       1.243   7.685  -7.897  1.00  0.00
ATOM     40  O   ILE     5      -1.301  10.084  -5.386  1.00  0.00
ATOM     41  C   ILE     5      -1.034   9.151  -4.654  1.00  0.00
ATOM     42  N   TYR     6      -1.978   8.382  -4.159  1.00  0.00
ATOM     43  CA  TYR     6      -3.419   8.646  -4.478  1.00  0.00
ATOM     44  CB  TYR     6      -3.817   7.946  -5.779  1.00  0.00
ATOM     45  CG  TYR     6      -5.231   8.242  -6.226  1.00  0.00
ATOM     46  CD1 TYR     6      -5.545   9.446  -6.843  1.00  0.00
ATOM     47  CD2 TYR     6      -6.247   7.315  -6.030  1.00  0.00
ATOM     48  CE1 TYR     6      -6.834   9.724  -7.255  1.00  0.00
ATOM     49  CE2 TYR     6      -7.542   7.576  -6.435  1.00  0.00
ATOM     50  CZ  TYR     6      -7.830   8.793  -7.052  1.00  0.00
ATOM     51  OH  TYR     6      -9.114   9.068  -7.461  1.00  0.00
ATOM     52  O   TYR     6      -3.914   7.178  -2.650  1.00  0.00
ATOM     53  C   TYR     6      -4.285   8.114  -3.334  1.00  0.00
ATOM     54  N   ASP     7      -5.422   8.715  -3.113  1.00  0.00
ATOM     55  CA  ASP     7      -6.308   8.259  -2.000  1.00  0.00
ATOM     56  CB  ASP     7      -7.425   9.275  -1.754  1.00  0.00
ATOM     57  CG  ASP     7      -6.916  10.563  -1.138  1.00  0.00
ATOM     58  OD1 ASP     7      -6.522  10.539   0.047  1.00  0.00
ATOM     59  OD2 ASP     7      -6.912  11.596  -1.839  1.00  0.00
ATOM     60  O   ASP     7      -7.323   6.662  -3.475  1.00  0.00
ATOM     61  C   ASP     7      -6.947   6.907  -2.345  1.00  0.00
ATOM     62  N   TYR     8      -7.070   6.031  -1.377  1.00  0.00
ATOM     63  CA  TYR     8      -7.686   4.690  -1.641  1.00  0.00
ATOM     64  CB  TYR     8      -6.635   3.712  -2.170  1.00  0.00
ATOM     65  CG  TYR     8      -6.006   4.138  -3.478  1.00  0.00
ATOM     66  CD1 TYR     8      -4.775   4.781  -3.498  1.00  0.00
ATOM     67  CD2 TYR     8      -6.645   3.896  -4.687  1.00  0.00
ATOM     68  CE1 TYR     8      -4.192   5.174  -4.688  1.00  0.00
ATOM     69  CE2 TYR     8      -6.077   4.281  -5.887  1.00  0.00
ATOM     70  CZ  TYR     8      -4.841   4.925  -5.879  1.00  0.00
ATOM     71  OH  TYR     8      -4.263   5.315  -7.065  1.00  0.00
ATOM     72  O   TYR     8      -7.967   4.576   0.736  1.00  0.00
ATOM     73  C   TYR     8      -8.279   4.119  -0.346  1.00  0.00
ATOM     74  N   LYS     9      -9.139   3.130  -0.450  1.00  0.00
ATOM     75  CA  LYS     9      -9.761   2.538   0.780  1.00  0.00
ATOM     76  CB  LYS     9     -11.231   2.949   0.888  1.00  0.00
ATOM     77  CG  LYS     9     -11.444   4.434   1.131  1.00  0.00
ATOM     78  CD  LYS     9     -12.923   4.771   1.227  1.00  0.00
ATOM     79  CE  LYS     9     -13.136   6.258   1.458  1.00  0.00
ATOM     80  NZ  LYS     9     -14.582   6.609   1.519  1.00  0.00
ATOM     81  O   LYS     9      -9.746   0.392  -0.301  1.00  0.00
ATOM     82  C   LYS     9      -9.694   1.005   0.747  1.00  0.00
ATOM     83  N   ALA    10      -9.582   0.390   1.899  1.00  0.00
ATOM     84  CA  ALA    10      -9.509  -1.108   1.967  1.00  0.00
ATOM     85  CB  ALA    10      -9.470  -1.572   3.415  1.00  0.00
ATOM     86  O   ALA    10     -11.797  -1.173   1.247  1.00  0.00
ATOM     87  C   ALA    10     -10.729  -1.749   1.290  1.00  0.00
ATOM     88  N   GLU    11     -10.569  -2.942   0.765  1.00  0.00
ATOM     89  CA  GLU    11     -11.709  -3.645   0.092  1.00  0.00
ATOM     90  CB  GLU    11     -11.617  -3.483  -1.427  1.00  0.00
ATOM     91  CG  GLU    11     -12.904  -3.812  -2.165  1.00  0.00
ATOM     92  CD  GLU    11     -12.779  -3.628  -3.665  1.00  0.00
ATOM     93  OE1 GLU    11     -11.685  -3.238  -4.126  1.00  0.00
ATOM     94  OE2 GLU    11     -13.773  -3.875  -4.379  1.00  0.00
ATOM     95  O   GLU    11     -12.634  -5.697   0.943  1.00  0.00
ATOM     96  C   GLU    11     -11.676  -5.150   0.431  1.00  0.00
ATOM     97  N   THR    12     -10.586  -5.820   0.136  1.00  0.00
ATOM     98  CA  THR    12     -10.494  -7.297   0.414  1.00  0.00
ATOM     99  CB  THR    12      -9.374  -7.958  -0.410  1.00  0.00
ATOM    100  CG2 THR    12      -9.600  -7.729  -1.897  1.00  0.00
ATOM    101  OG1 THR    12      -8.109  -7.394  -0.042  1.00  0.00
ATOM    102  O   THR    12     -10.291  -6.696   2.734  1.00  0.00
ATOM    103  C   THR    12     -10.197  -7.572   1.897  1.00  0.00
ATOM    104  N   GLU    13      -9.846  -8.796   2.222  1.00  0.00
ATOM    105  CA  GLU    13      -9.549  -9.154   3.649  1.00  0.00
ATOM    106  CB  GLU    13      -9.325 -10.661   3.788  1.00  0.00
ATOM    107  CG  GLU    13      -9.155 -11.134   5.222  1.00  0.00
ATOM    108  CD  GLU    13      -8.948 -12.632   5.321  1.00  0.00
ATOM    109  OE1 GLU    13      -8.943 -13.302   4.267  1.00  0.00
ATOM    110  OE2 GLU    13      -8.790 -13.137   6.453  1.00  0.00
ATOM    111  O   GLU    13      -8.368  -7.450   4.851  1.00  0.00
ATOM    112  C   GLU    13      -8.287  -8.431   4.135  1.00  0.00
ATOM    113  N   GLU    14      -7.121  -8.898   3.748  1.00  0.00
ATOM    114  CA  GLU    14      -5.854  -8.224   4.182  1.00  0.00
ATOM    115  CB  GLU    14      -4.662  -9.169   4.019  1.00  0.00
ATOM    116  CG  GLU    14      -4.698 -10.379   4.938  1.00  0.00
ATOM    117  CD  GLU    14      -3.537 -11.324   4.703  1.00  0.00
ATOM    118  OE1 GLU    14      -2.717 -11.046   3.803  1.00  0.00
ATOM    119  OE2 GLU    14      -3.446 -12.344   5.420  1.00  0.00
ATOM    120  O   GLU    14      -4.604  -6.842   2.674  1.00  0.00
ATOM    121  C   GLU    14      -5.619  -6.975   3.326  1.00  0.00
ATOM    122  N   ASP    15      -6.560  -6.065   3.325  1.00  0.00
ATOM    123  CA  ASP    15      -6.420  -4.821   2.509  1.00  0.00
ATOM    124  CB  ASP    15      -7.771  -4.414   1.916  1.00  0.00
ATOM    125  CG  ASP    15      -8.806  -4.108   2.980  1.00  0.00
ATOM    126  OD1 ASP    15      -9.920  -3.676   2.618  1.00  0.00
ATOM    127  OD2 ASP    15      -8.503  -4.302   4.177  1.00  0.00
ATOM    128  O   ASP    15      -5.710  -3.825   4.569  1.00  0.00
ATOM    129  C   ASP    15      -5.904  -3.669   3.377  1.00  0.00
ATOM    130  N   LEU    16      -5.673  -2.521   2.791  1.00  0.00
ATOM    131  CA  LEU    16      -5.162  -1.364   3.585  1.00  0.00
ATOM    132  CB  LEU    16      -3.634  -1.400   3.662  1.00  0.00
ATOM    133  CG  LEU    16      -2.976  -0.348   4.557  1.00  0.00
ATOM    134  CD1 LEU    16      -3.389  -0.542   6.008  1.00  0.00
ATOM    135  CD2 LEU    16      -1.460  -0.447   4.477  1.00  0.00
ATOM    136  O   LEU    16      -5.393   0.172   1.755  1.00  0.00
ATOM    137  C   LEU    16      -5.582  -0.039   2.939  1.00  0.00
ATOM    138  N   THR    17      -6.149   0.854   3.713  1.00  0.00
ATOM    139  CA  THR    17      -6.579   2.170   3.157  1.00  0.00
ATOM    140  CB  THR    17      -7.867   2.675   3.833  1.00  0.00
ATOM    141  CG2 THR    17      -8.282   4.018   3.254  1.00  0.00
ATOM    142  OG1 THR    17      -8.924   1.731   3.619  1.00  0.00
ATOM    143  O   THR    17      -4.977   3.378   4.464  1.00  0.00
ATOM    144  C   THR    17      -5.491   3.220   3.373  1.00  0.00
ATOM    145  N   ILE    18      -5.146   3.945   2.340  1.00  0.00
ATOM    146  CA  ILE    18      -4.097   5.005   2.477  1.00  0.00
ATOM    147  CB  ILE    18      -2.779   4.585   1.801  1.00  0.00
ATOM    148  CG1 ILE    18      -2.995   4.361   0.303  1.00  0.00
ATOM    149  CG2 ILE    18      -2.255   3.294   2.411  1.00  0.00
ATOM    150  CD1 ILE    18      -1.713   4.161  -0.476  1.00  0.00
ATOM    151  O   ILE    18      -5.696   6.412   1.375  1.00  0.00
ATOM    152  C   ILE    18      -4.570   6.306   1.825  1.00  0.00
ATOM    153  N   LYS    19      -3.724   7.303   1.800  1.00  0.00
ATOM    154  CA  LYS    19      -4.117   8.613   1.206  1.00  0.00
ATOM    155  CB  LYS    19      -4.046   9.721   2.258  1.00  0.00
ATOM    156  CG  LYS    19      -4.964   9.505   3.450  1.00  0.00
ATOM    157  CD  LYS    19      -4.843  10.641   4.454  1.00  0.00
ATOM    158  CE  LYS    19      -5.752  10.419   5.651  1.00  0.00
ATOM    159  NZ  LYS    19      -5.617  11.506   6.660  1.00  0.00
ATOM    160  O   LYS    19      -2.275   8.277  -0.306  1.00  0.00
ATOM    161  C   LYS    19      -3.189   8.995   0.049  1.00  0.00
ATOM    162  N   LYS    20      -3.467  10.110  -0.562  1.00  0.00
ATOM    163  CA  LYS    20      -2.667  10.580  -1.737  1.00  0.00
ATOM    164  CB  LYS    20      -3.228  11.898  -2.274  1.00  0.00
ATOM    165  CG  LYS    20      -4.558  11.759  -2.995  1.00  0.00
ATOM    166  CD  LYS    20      -5.055  13.103  -3.501  1.00  0.00
ATOM    167  CE  LYS    20      -6.392  12.966  -4.212  1.00  0.00
ATOM    168  NZ  LYS    20      -6.909  14.281  -4.682  1.00  0.00
ATOM    169  O   LYS    20      -0.370  10.860  -2.328  1.00  0.00
ATOM    170  C   LYS    20      -1.193  10.830  -1.434  1.00  0.00
ATOM    171  N   GLY    21      -0.864  11.037  -0.208  1.00  0.00
ATOM    172  CA  GLY    21       0.560  11.311   0.158  1.00  0.00
ATOM    173  O   GLY    21       1.569  11.098   2.316  1.00  0.00
ATOM    174  C   GLY    21       0.903  10.571   1.445  1.00  0.00
ATOM    175  N   GLU    22       0.445   9.355   1.570  1.00  0.00
ATOM    176  CA  GLU    22       0.740   8.569   2.822  1.00  0.00
ATOM    177  CB  GLU    22      -0.408   7.607   3.134  1.00  0.00
ATOM    178  CG  GLU    22      -0.360   7.016   4.533  1.00  0.00
ATOM    179  CD  GLU    22      -1.519   6.079   4.810  1.00  0.00
ATOM    180  OE1 GLU    22      -2.363   5.896   3.908  1.00  0.00
ATOM    181  OE2 GLU    22      -1.582   5.527   5.929  1.00  0.00
ATOM    182  O   GLU    22       2.567   7.608   1.605  1.00  0.00
ATOM    183  C   GLU    22       2.021   7.741   2.678  1.00  0.00
ATOM    184  N   LYS    23       2.490   7.165   3.759  1.00  0.00
ATOM    185  CA  LYS    23       3.719   6.328   3.700  1.00  0.00
ATOM    186  CB  LYS    23       4.831   6.948   4.549  1.00  0.00
ATOM    187  CG  LYS    23       5.374   8.257   4.000  1.00  0.00
ATOM    188  CD  LYS    23       6.473   8.815   4.891  1.00  0.00
ATOM    189  CE  LYS    23       7.008  10.130   4.348  1.00  0.00
ATOM    190  NZ  LYS    23       8.060  10.707   5.230  1.00  0.00
ATOM    191  O   LYS    23       2.833   4.751   5.275  1.00  0.00
ATOM    192  C   LYS    23       3.429   4.923   4.229  1.00  0.00
ATOM    193  N   LEU    24       3.856   3.924   3.508  1.00  0.00
ATOM    194  CA  LEU    24       3.627   2.514   3.941  1.00  0.00
ATOM    195  CB  LEU    24       2.460   1.898   3.166  1.00  0.00
ATOM    196  CG  LEU    24       1.072   2.467   3.466  1.00  0.00
ATOM    197  CD1 LEU    24       1.120   3.985   3.553  1.00  0.00
ATOM    198  CD2 LEU    24       0.087   2.085   2.372  1.00  0.00
ATOM    199  O   LEU    24       5.620   1.957   2.749  1.00  0.00
ATOM    200  C   LEU    24       4.884   1.694   3.679  1.00  0.00
ATOM    201  N   GLU    25       5.133   0.702   4.486  1.00  0.00
ATOM    202  CA  GLU    25       6.338  -0.147   4.272  1.00  0.00
ATOM    203  CB  GLU    25       6.951  -0.556   5.613  1.00  0.00
ATOM    204  CG  GLU    25       7.528   0.602   6.410  1.00  0.00
ATOM    205  CD  GLU    25       8.067   0.169   7.760  1.00  0.00
ATOM    206  OE1 GLU    25       7.964  -1.033   8.083  1.00  0.00
ATOM    207  OE2 GLU    25       8.592   1.032   8.494  1.00  0.00
ATOM    208  O   GLU    25       4.774  -1.804   3.584  1.00  0.00
ATOM    209  C   GLU    25       5.909  -1.390   3.504  1.00  0.00
ATOM    210  N   ILE    26       6.796  -1.997   2.776  1.00  0.00
ATOM    211  CA  ILE    26       6.409  -3.225   2.013  1.00  0.00
ATOM    212  CB  ILE    26       7.081  -3.264   0.628  1.00  0.00
ATOM    213  CG1 ILE    26       8.602  -3.322   0.774  1.00  0.00
ATOM    214  CG2 ILE    26       6.720  -2.022  -0.174  1.00  0.00
ATOM    215  CD1 ILE    26       9.331  -3.583  -0.526  1.00  0.00
ATOM    216  O   ILE    26       7.913  -4.528   3.355  1.00  0.00
ATOM    217  C   ILE    26       6.838  -4.466   2.792  1.00  0.00
ATOM    218  N   ILE    27       5.996  -5.450   2.808  1.00  0.00
ATOM    219  CA  ILE    27       6.297  -6.711   3.529  1.00  0.00
ATOM    220  CB  ILE    27       5.025  -7.332   4.135  1.00  0.00
ATOM    221  CG1 ILE    27       5.392  -8.360   5.207  1.00  0.00
ATOM    222  CG2 ILE    27       4.208  -8.030   3.058  1.00  0.00
ATOM    223  CD1 ILE    27       4.217  -8.814   6.045  1.00  0.00
ATOM    224  O   ILE    27       7.760  -8.506   2.899  1.00  0.00
ATOM    225  C   ILE    27       6.912  -7.710   2.547  1.00  0.00
ATOM    226  N   GLU    28       6.490  -7.655   1.310  1.00  0.00
ATOM    227  CA  GLU    28       7.037  -8.584   0.276  1.00  0.00
ATOM    228  CB  GLU    28       6.290  -9.919   0.306  1.00  0.00
ATOM    229  CG  GLU    28       4.802  -9.804   0.015  1.00  0.00
ATOM    230  CD  GLU    28       4.089 -11.139   0.091  1.00  0.00
ATOM    231  OE1 GLU    28       4.752 -12.150   0.403  1.00  0.00
ATOM    232  OE2 GLU    28       2.866 -11.175  -0.161  1.00  0.00
ATOM    233  O   GLU    28       6.252  -6.945  -1.290  1.00  0.00
ATOM    234  C   GLU    28       6.885  -7.970  -1.121  1.00  0.00
ATOM    235  N   LYS    29       7.453  -8.598  -2.120  1.00  0.00
ATOM    236  CA  LYS    29       7.342  -8.068  -3.516  1.00  0.00
ATOM    237  CB  LYS    29       8.716  -7.643  -4.039  1.00  0.00
ATOM    238  CG  LYS    29       8.684  -6.996  -5.413  1.00  0.00
ATOM    239  CD  LYS    29      10.075  -6.575  -5.858  1.00  0.00
ATOM    240  CE  LYS    29      10.046  -5.945  -7.241  1.00  0.00
ATOM    241  NZ  LYS    29      11.401  -5.517  -7.686  1.00  0.00
ATOM    242  O   LYS    29       7.382 -10.194  -4.624  1.00  0.00
ATOM    243  C   LYS    29       6.776  -9.155  -4.438  1.00  0.00
ATOM    244  N   GLU    30       5.618  -8.927  -5.006  1.00  0.00
ATOM    245  CA  GLU    30       5.006  -9.949  -5.909  1.00  0.00
ATOM    246  CB  GLU    30       3.553 -10.215  -5.511  1.00  0.00
ATOM    247  CG  GLU    30       3.394 -10.890  -4.158  1.00  0.00
ATOM    248  CD  GLU    30       1.941 -11.077  -3.768  1.00  0.00
ATOM    249  OE1 GLU    30       1.058 -10.655  -4.544  1.00  0.00
ATOM    250  OE2 GLU    30       1.685 -11.647  -2.686  1.00  0.00
ATOM    251  O   GLU    30       5.804  -9.938  -8.168  1.00  0.00
ATOM    252  C   GLU    30       5.030  -9.461  -7.361  1.00  0.00
ATOM    253  N   GLY    31       4.187  -8.514  -7.696  1.00  0.00
ATOM    254  CA  GLY    31       4.160  -7.998  -9.097  1.00  0.00
ATOM    255  O   GLY    31       3.285  -5.766  -9.037  1.00  0.00
ATOM    256  C   GLY    31       3.061  -6.941  -9.253  1.00  0.00
ATOM    257  N   ASP    32       1.880  -7.353  -9.641  1.00  0.00
ATOM    258  CA  ASP    32       0.757  -6.376  -9.835  1.00  0.00
ATOM    259  CB  ASP    32      -0.480  -7.085 -10.391  1.00  0.00
ATOM    260  CG  ASP    32      -0.314  -7.495 -11.841  1.00  0.00
ATOM    261  OD1 ASP    32      -1.314  -7.921 -12.456  1.00  0.00
ATOM    262  OD2 ASP    32       0.816  -7.389 -12.362  1.00  0.00
ATOM    263  O   ASP    32       0.195  -4.503  -8.442  1.00  0.00
ATOM    264  C   ASP    32       0.366  -5.707  -8.509  1.00  0.00
ATOM    265  N   TRP    33       0.210  -6.478  -7.463  1.00  0.00
ATOM    266  CA  TRP    33      -0.178  -5.892  -6.143  1.00  0.00
ATOM    267  CB  TRP    33      -1.589  -6.337  -5.753  1.00  0.00
ATOM    268  CG  TRP    33      -2.657  -5.808  -6.661  1.00  0.00
ATOM    269  CD1 TRP    33      -2.491  -4.942  -7.703  1.00  0.00
ATOM    270  CD2 TRP    33      -4.056  -6.110  -6.608  1.00  0.00
ATOM    271  CE2 TRP    33      -4.678  -5.392  -7.649  1.00  0.00
ATOM    272  CE3 TRP    33      -4.845  -6.918  -5.783  1.00  0.00
ATOM    273  NE1 TRP    33      -3.700  -4.685  -8.304  1.00  0.00
ATOM    274  CZ2 TRP    33      -6.050  -5.457  -7.886  1.00  0.00
ATOM    275  CZ3 TRP    33      -6.205  -6.979  -6.022  1.00  0.00
ATOM    276  CH2 TRP    33      -6.796  -6.255  -7.062  1.00  0.00
ATOM    277  O   TRP    33       1.214  -7.506  -5.051  1.00  0.00
ATOM    278  C   TRP    33       0.807  -6.361  -5.065  1.00  0.00
ATOM    279  N   TRP    34       1.197  -5.487  -4.168  1.00  0.00
ATOM    280  CA  TRP    34       2.166  -5.888  -3.093  1.00  0.00
ATOM    281  CB  TRP    34       3.416  -5.007  -3.142  1.00  0.00
ATOM    282  CG  TRP    34       4.219  -5.175  -4.395  1.00  0.00
ATOM    283  CD1 TRP    34       3.985  -6.062  -5.406  1.00  0.00
ATOM    284  CD2 TRP    34       5.388  -4.437  -4.771  1.00  0.00
ATOM    285  CE2 TRP    34       5.809  -4.930  -6.022  1.00  0.00
ATOM    286  CE3 TRP    34       6.121  -3.407  -4.173  1.00  0.00
ATOM    287  NE1 TRP    34       4.935  -5.923  -6.389  1.00  0.00
ATOM    288  CZ2 TRP    34       6.928  -4.429  -6.685  1.00  0.00
ATOM    289  CZ3 TRP    34       7.230  -2.914  -4.834  1.00  0.00
ATOM    290  CH2 TRP    34       7.625  -3.422  -6.076  1.00  0.00
ATOM    291  O   TRP    34       0.553  -5.033  -1.536  1.00  0.00
ATOM    292  C   TRP    34       1.525  -5.741  -1.709  1.00  0.00
ATOM    293  N   LYS    35       2.081  -6.394  -0.719  1.00  0.00
ATOM    294  CA  LYS    35       1.521  -6.298   0.669  1.00  0.00
ATOM    295  CB  LYS    35       1.561  -7.663   1.359  1.00  0.00
ATOM    296  CG  LYS    35       0.939  -7.677   2.745  1.00  0.00
ATOM    297  CD  LYS    35       0.989  -9.066   3.359  1.00  0.00
ATOM    298  CE  LYS    35       0.384  -9.075   4.754  1.00  0.00
ATOM    299  NZ  LYS    35       0.415 -10.434   5.364  1.00  0.00
ATOM    300  O   LYS    35       3.526  -5.503   1.685  1.00  0.00
ATOM    301  C   LYS    35       2.346  -5.302   1.498  1.00  0.00
ATOM    302  N   ALA    36       1.748  -4.237   1.996  1.00  0.00
ATOM    303  CA  ALA    36       2.539  -3.244   2.800  1.00  0.00
ATOM    304  CB  ALA    36       2.694  -1.942   2.030  1.00  0.00
ATOM    305  O   ALA    36       0.693  -3.147   4.359  1.00  0.00
ATOM    306  C   ALA    36       1.869  -2.906   4.148  1.00  0.00
ATOM    307  N   LYS    37       2.625  -2.325   5.057  1.00  0.00
ATOM    308  CA  LYS    37       2.078  -1.948   6.387  1.00  0.00
ATOM    309  CB  LYS    37       2.933  -2.545   7.507  1.00  0.00
ATOM    310  CG  LYS    37       2.394  -2.286   8.904  1.00  0.00
ATOM    311  CD  LYS    37       3.275  -2.927   9.963  1.00  0.00
ATOM    312  CE  LYS    37       2.748  -2.652  11.362  1.00  0.00
ATOM    313  NZ  LYS    37       3.595  -3.285  12.410  1.00  0.00
ATOM    314  O   LYS    37       3.095   0.225   6.543  1.00  0.00
ATOM    315  C   LYS    37       2.063  -0.421   6.549  1.00  0.00
ATOM    316  N   ALA    38       0.898   0.151   6.722  1.00  0.00
ATOM    317  CA  ALA    38       0.800   1.628   6.914  1.00  0.00
ATOM    318  CB  ALA    38      -0.638   2.092   6.735  1.00  0.00
ATOM    319  O   ALA    38       0.685   1.567   9.313  1.00  0.00
ATOM    320  C   ALA    38       1.269   1.993   8.325  1.00  0.00
ATOM    321  N   ILE    39       2.316   2.775   8.425  1.00  0.00
ATOM    322  CA  ILE    39       2.839   3.175   9.769  1.00  0.00
ATOM    323  CB  ILE    39       4.199   3.889   9.656  1.00  0.00
ATOM    324  CG1 ILE    39       4.049   5.201   8.883  1.00  0.00
ATOM    325  CG2 ILE    39       5.203   3.011   8.925  1.00  0.00
ATOM    326  CD1 ILE    39       5.286   6.072   8.913  1.00  0.00
ATOM    327  O   ILE    39       1.832   4.227  11.671  1.00  0.00
ATOM    328  C   ILE    39       1.860   4.129  10.459  1.00  0.00
ATOM    329  N   GLY    40       1.059   4.834   9.696  1.00  0.00
ATOM    330  CA  GLY    40       0.076   5.783  10.309  1.00  0.00
ATOM    331  O   GLY    40      -1.395   5.622  12.197  1.00  0.00
ATOM    332  C   GLY    40      -0.847   5.038  11.281  1.00  0.00
ATOM    333  N   SER    41      -1.012   3.751  11.090  1.00  0.00
ATOM    334  CA  SER    41      -1.888   2.961  12.005  1.00  0.00
ATOM    335  CB  SER    41      -3.266   2.748  11.376  1.00  0.00
ATOM    336  OG  SER    41      -3.164   2.039  10.152  1.00  0.00
ATOM    337  O   SER    41      -1.930   0.708  12.825  1.00  0.00
ATOM    338  C   SER    41      -1.271   1.582  12.295  1.00  0.00
ATOM    339  N   GLY    42      -0.011   1.376  11.958  1.00  0.00
ATOM    340  CA  GLY    42       0.648   0.048  12.218  1.00  0.00
ATOM    341  O   GLY    42      -0.155  -2.208  12.131  1.00  0.00
ATOM    342  C   GLY    42      -0.188  -1.096  11.637  1.00  0.00
ATOM    343  N   GLU    43      -0.924  -0.836  10.587  1.00  0.00
ATOM    344  CA  GLU    43      -1.754  -1.914   9.968  1.00  0.00
ATOM    345  CB  GLU    43      -3.165  -1.401   9.673  1.00  0.00
ATOM    346  CG  GLU    43      -3.964  -1.034  10.912  1.00  0.00
ATOM    347  CD  GLU    43      -5.331  -0.470  10.578  1.00  0.00
ATOM    348  OE1 GLU    43      -5.642  -0.340   9.376  1.00  0.00
ATOM    349  OE2 GLU    43      -6.090  -0.156  11.519  1.00  0.00
ATOM    350  O   GLU    43      -0.141  -1.758   8.235  1.00  0.00
ATOM    351  C   GLU    43      -1.098  -2.356   8.667  1.00  0.00
ATOM    352  N   ILE    44      -1.596  -3.388   8.038  1.00  0.00
ATOM    353  CA  ILE    44      -0.966  -3.841   6.761  1.00  0.00
ATOM    354  CB  ILE    44       0.228  -4.778   7.022  1.00  0.00
ATOM    355  CG1 ILE    44       1.000  -5.032   5.726  1.00  0.00
ATOM    356  CG2 ILE    44      -0.253  -6.115   7.566  1.00  0.00
ATOM    357  CD1 ILE    44       2.338  -5.708   5.934  1.00  0.00
ATOM    358  O   ILE    44      -2.809  -5.320   6.348  1.00  0.00
ATOM    359  C   ILE    44      -1.948  -4.601   5.879  1.00  0.00
ATOM    360  N   GLY    45      -1.803  -4.440   4.591  1.00  0.00
ATOM    361  CA  GLY    45      -2.699  -5.138   3.633  1.00  0.00
ATOM    362  O   GLY    45      -0.923  -5.050   2.035  1.00  0.00
ATOM    363  C   GLY    45      -2.121  -5.014   2.224  1.00  0.00
ATOM    364  N   TYR    46      -2.968  -4.851   1.242  1.00  0.00
ATOM    365  CA  TYR    46      -2.495  -4.730  -0.172  1.00  0.00
ATOM    366  CB  TYR    46      -3.503  -5.368  -1.130  1.00  0.00
ATOM    367  CG  TYR    46      -3.612  -6.870  -0.994  1.00  0.00
ATOM    368  CD1 TYR    46      -4.632  -7.444  -0.245  1.00  0.00
ATOM    369  CD2 TYR    46      -2.695  -7.709  -1.614  1.00  0.00
ATOM    370  CE1 TYR    46      -4.739  -8.815  -0.115  1.00  0.00
ATOM    371  CE2 TYR    46      -2.787  -9.083  -1.495  1.00  0.00
ATOM    372  CZ  TYR    46      -3.820  -9.632  -0.737  1.00  0.00
ATOM    373  OH  TYR    46      -3.925 -10.998  -0.609  1.00  0.00
ATOM    374  O   TYR    46      -2.917  -2.379   0.029  1.00  0.00
ATOM    375  C   TYR    46      -2.324  -3.260  -0.564  1.00  0.00
ATOM    376  N   ILE    47      -1.536  -2.999  -1.579  1.00  0.00
ATOM    377  CA  ILE    47      -1.334  -1.595  -2.046  1.00  0.00
ATOM    378  CB  ILE    47      -0.143  -0.929  -1.333  1.00  0.00
ATOM    379  CG1 ILE    47       0.024   0.515  -1.809  1.00  0.00
ATOM    380  CG2 ILE    47       1.144  -1.685  -1.625  1.00  0.00
ATOM    381  CD1 ILE    47       0.984   1.329  -0.968  1.00  0.00
ATOM    382  O   ILE    47      -0.060  -2.139  -3.996  1.00  0.00
ATOM    383  C   ILE    47      -1.058  -1.595  -3.563  1.00  0.00
ATOM    384  N   PRO    48      -1.950  -1.005  -4.337  1.00  0.00
ATOM    385  CA  PRO    48      -1.756  -0.965  -5.816  1.00  0.00
ATOM    386  CB  PRO    48      -2.903  -0.084  -6.316  1.00  0.00
ATOM    387  CG  PRO    48      -3.973  -0.245  -5.289  1.00  0.00
ATOM    388  CD  PRO    48      -3.274  -0.259  -3.958  1.00  0.00
ATOM    389  O   PRO    48      -0.149   0.812  -6.026  1.00  0.00
ATOM    390  C   PRO    48      -0.391  -0.367  -6.188  1.00  0.00
ATOM    391  N   ALA    49       0.497  -1.190  -6.692  1.00  0.00
ATOM    392  CA  ALA    49       1.862  -0.706  -7.081  1.00  0.00
ATOM    393  CB  ALA    49       2.715  -1.865  -7.575  1.00  0.00
ATOM    394  O   ALA    49       2.640   1.208  -8.300  1.00  0.00
ATOM    395  C   ALA    49       1.792   0.340  -8.202  1.00  0.00
ATOM    396  N   ASN    50       0.811   0.245  -9.065  1.00  0.00
ATOM    397  CA  ASN    50       0.707   1.220 -10.199  1.00  0.00
ATOM    398  CB  ASN    50      -0.336   0.751 -11.215  1.00  0.00
ATOM    399  CG  ASN    50       0.114  -0.473 -11.989  1.00  0.00
ATOM    400  ND2 ASN    50      -0.522  -1.608 -11.720  1.00  0.00
ATOM    401  OD1 ASN    50       1.021  -0.397 -12.817  1.00  0.00
ATOM    402  O   ASN    50       0.382   3.583 -10.447  1.00  0.00
ATOM    403  C   ASN    50       0.291   2.620  -9.709  1.00  0.00
ATOM    404  N   TYR    51      -0.156   2.745  -8.481  1.00  0.00
ATOM    405  CA  TYR    51      -0.563   4.091  -7.957  1.00  0.00
ATOM    406  CB  TYR    51      -2.053   4.102  -7.609  1.00  0.00
ATOM    407  CG  TYR    51      -2.957   3.765  -8.773  1.00  0.00
ATOM    408  CD1 TYR    51      -3.458   2.480  -8.935  1.00  0.00
ATOM    409  CD2 TYR    51      -3.306   4.733  -9.706  1.00  0.00
ATOM    410  CE1 TYR    51      -4.285   2.162  -9.996  1.00  0.00
ATOM    411  CE2 TYR    51      -4.131   4.434 -10.773  1.00  0.00
ATOM    412  CZ  TYR    51      -4.621   3.135 -10.912  1.00  0.00
ATOM    413  OH  TYR    51      -5.444   2.822 -11.969  1.00  0.00
ATOM    414  O   TYR    51      -0.303   4.875  -5.702  1.00  0.00
ATOM    415  C   TYR    51       0.241   4.424  -6.694  1.00  0.00
ATOM    416  N   ILE    52       1.530   4.195  -6.722  1.00  0.00
ATOM    417  CA  ILE    52       2.368   4.478  -5.520  1.00  0.00
ATOM    418  CB  ILE    52       2.338   3.305  -4.522  1.00  0.00
ATOM    419  CG1 ILE    52       2.886   2.035  -5.176  1.00  0.00
ATOM    420  CG2 ILE    52       0.914   3.035  -4.061  1.00  0.00
ATOM    421  CD1 ILE    52       3.098   0.893  -4.206  1.00  0.00
ATOM    422  O   ILE    52       4.224   4.476  -7.043  1.00  0.00
ATOM    423  C   ILE    52       3.825   4.714  -5.919  1.00  0.00
ATOM    424  N   ALA    53       4.615   5.167  -4.990  1.00  0.00
ATOM    425  CA  ALA    53       6.062   5.416  -5.272  1.00  0.00
ATOM    426  CB  ALA    53       6.395   6.887  -5.074  1.00  0.00
ATOM    427  O   ALA    53       6.833   4.716  -3.112  1.00  0.00
ATOM    428  C   ALA    53       6.920   4.576  -4.317  1.00  0.00
ATOM    429  N   ALA    54       7.728   3.687  -4.843  1.00  0.00
ATOM    430  CA  ALA    54       8.565   2.823  -3.973  1.00  0.00
ATOM    431  CB  ALA    54       8.756   1.455  -4.611  1.00  0.00
ATOM    432  O   ALA    54      10.647   3.795  -4.667  1.00  0.00
ATOM    433  C   ALA    54       9.952   3.433  -3.740  1.00  0.00
ATOM    434  N   ALA    55      10.353   3.532  -2.498  1.00  0.00
ATOM    435  CA  ALA    55      11.690   4.098  -2.161  1.00  0.00
ATOM    436  CB  ALA    55      11.542   5.491  -1.570  1.00  0.00
ATOM    437  O   ALA    55      11.757   2.440  -0.417  1.00  0.00
ATOM    438  C   ALA    55      12.393   3.195  -1.135  1.00  0.00
ATOM    439  N   GLU    56      13.698   3.269  -1.065  1.00  0.00
ATOM    440  CA  GLU    56      14.458   2.441  -0.111  1.00  0.00
ATOM    441  CB  GLU    56      15.549   1.652  -0.837  1.00  0.00
ATOM    442  CG  GLU    56      15.019   0.612  -1.811  1.00  0.00
ATOM    443  CD  GLU    56      16.127  -0.104  -2.559  1.00  0.00
ATOM    444  OE1 GLU    56      17.308   0.232  -2.335  1.00  0.00
ATOM    445  OE2 GLU    56      15.813  -1.001  -3.369  1.00  0.00
ATOM    446  O   GLU    56      16.323   3.483   0.983  1.00  0.00
ATOM    447  C   GLU    56      15.115   3.340   0.943  1.00  0.00
TER
END

