
PFRMAT TS
TARGET T0099
AUTHOR 6000-4062-7650
METHOD Foresst method for structure family recognition
METHOD see V. Di Francesco,et al. Bioinformatics,
METHOD vol. 15, 131 - 140, 1999.
METHOD see V. Geetha  Protein Engineering, vol. 12,
METHOD pp. 527 - 534, 1999.
METHOD Secondary structure prediction from PSI-PRED
METHOD (http://globin.bio.warwick.ac.uk/psipred/  or
METHOD  http://insulin.brunel.ac.uk/psipred/)
METHOD  Top FORESST predicted family with Z-score above 2.0, and
METHOD  model length within 20% of query sequence is chosen
METHOD  Alignment by CLUSTALW to family member with highest amino
METHOD  acid sequence identity is chosen as template.
REMARK A preliminary PSI BLAST search has detected a significant
REMARK homology (E <= 0.01) with the following protein structures:
REMARK gi|2982012|pdb|1A0N|B Chain B, Nmr Study Of
REMARK The Sh3 Domain From...    91  3e-18
REMARK gi|2982073|pdb|1AZG|B Chain B, Nmr Study Of
REMARK The Sh3 Domain From...    91  3e-18
REMARK pdb|1FYN|1FYN-A phosphotransferase fynfragment:
REMARK sh3 domain; (pr...    91  3e-18
REMARK gi|1942719|pdb|1EFN|C Chain C, Hiv-1 Nef Protein
REMARK In Complex Wit...    89  9e-18
REMARK pdb|1A0N|1A0N-B pro-pro-arg-pro-leu-pro-val-ala
REMARK -pro-gly-ser-ser...  88  2e-17
REMARK gi|5542349|pdb|1QCF|A Chain A, Crystal Structure
REMARK Of Hck In Comp...    87  4e-17
REMARK gi|3318781|pdb|4HCK|    Human Hck Sh3 Domain,
REMARK Nmr, 25 Structure...    87  4e-17
REMARK pdb|4HCK|4HCK hematopoietic cell kinasefragment:
REMARK sh3 domain; (hck)    87  4e-17
REMARK pdb|1QCF|1QCF-A haematopoetic cell kinase (hck)fragment:
REMARK sh3-sh...    87  4e-17
REMARK pdb|1BU1|1BU1-A hemopoietic cell kinasefragment: sh3;
REMARK 87  4e-17
REMARK pdb|1AD5|1AD5-A haematopoetic cell kinase hckfragment:
REMARK 87  4e-17
REMARK pdb|1EFN|1EFN-A fyn tyrosine kinasefragment: sh3 domain,
REMARK 87  5e-17
REMARK gi|2780916|pdb|2PTK|    Chicken Src Tyrosine Kinase
REMARK 85  1e-16
REMARK gi|5822499|pdb|2SRC|    Crystal Structure Of Human
REMARK 85  1e-16
REMARK pdb|2SRC|2SRC tyrosine-protein kinase srcfragment: residues
REMARK 85  1e-16
REMARK pdb|2PTK|2PTK tyrosine-protein kinase transforming protein
REMARK 85  1e-16
REMARK pdb|1FMK|1FMK tyrosine-protein kinase srcfragment: residues
REMARK 85  1e-16
REMARK gi|1942473|pdb|1NLO|C Chain C, Structure Of Signal
REMARK 84  4e-16
REMARK gi|999679|pdb|1PRL|C Chain C, C-Src (Sh3 Domain) Complexed
REMARK 84  4e-16
REMARK pdb|1NLO|1NLO-C c-srcfragment: sh3 domain;   nl1
REMARK 84  4e-16
REMARK gi|6730486|pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain
REMARK 77  5e-14
REMARK pdb|1QLY|1QLY-A tyrosine-protein kinase btk(brutons tyrosine
REMARK 77  5e-14
REMARK pdb|1AWW|1AWW bruton's tyrosine kinasefragment: sh3 domain;
REMARK (at...    77  5e-14
REMARK pdb|1GRI|1GRI-A growth factor bound protein 2
REMARK 75  2e-13
REMARK pdb|1GFC|1GFC Growth factor receptor-bound protein 2 (grb2)
REMARK 75  2e-13
REMARK gi|1311313|pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of
REMARK 74  3e-13
REMARK pdb|1LCK|1LCK-A p56==lck== tyrosine kinaseMutanttail
REMARK 74  3e-13
REMARK pdb|1GBR|1GBR-A Growth factor receptor-bound protein 2 (grb2,
REMARK 73  4e-13
REMARK pdb|1GBQ|1GBQ-A grb2fragment: n-terminal sh3 domain;
REMARK 73  4e-13
REMARK gi|6730065|pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With
REMARK 71  2e-12
REMARK pdb|2SEM|2SEM-B sex muscle abnormal protein 5fragment:
REMARK 71  2e-12
REMARK pdb|1SEM|1SEM-A sem-5(grb2 (mammalian homologue), drk
REMARK 71  2e-12
REMARK pdb|1ARK|1ARK nebulinfragment: sh3 domain, residues 6610 - 6669;
REMARK 71  2e-12
REMARK pdb|1HSQ|1HSQ Phospholipase c-gamma (sh3 domain) (NMR,
REMARK 70  5e-12
REMARK pdb|1AZE|1AZE-A grb2fragment: n-terminal sh3 domain, residues
REMARK 70  7e-12
REMARK gi|6729971|pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With
REMARK 68  2e-11
REMARK pdb|1B07|1B07-A proto-oncogene crk (crk)fragment: sh3 domain;
REMARK 68  2e-11
REMARK pdb|1BK2|1BK2 a-spectrinfragment: sh3-domain;  Mutant
REMARK 66  8e-11
REMARK pdb|1CSK|1CSK-A C-src kinase (sh3 domain)
REMARK 64  3e-10
REMARK gi|2914378|pdb|1AWO|    The Solution Nmr Structure Of Abl Sh3
REMARK 64  4e-10
REMARK gi|1311410|pdb|1ABO|A Chain A, Crystal Structure Of The
REMARK 64  4e-10
REMARK gi|2194099|pdb|1AEY|    Alpha-Spectrin Src Homology 3 Domain,
REMARK 64  4e-10
REMARK pdb|2ABL|2ABL abl tyrosine kinasefragment: sh3-sh2 domain
REMARK 64  4e-10
REMARK pdb|1PWT|1PWT alpha spectrinfragment: sh3 domain; (pwt)Mutant
REMARK 64  4e-10
REMARK pdb|1BBZ|1BBZ-E abl tyrosine kinasefragment: sh3 domain;
REMARK 64  4e-10
REMARK pdb|1AWO|1AWO abl tyrosine kinasefragment: src-homology 3
REMARK 64  4e-10
REMARK pdb|1AEY|1AEY alpha-spectrinfragment: src homology 3 domain;
REMARK 64  4e-10
REMARK pdb|1ABQ|1ABQ abl tyrosine kinase src-homology 3 (sh3)
REMARK 64  4e-10
REMARK pdb|1ABO|1ABO-A abl tyrosine kinase(p150)3bp-1 synthetic
REMARK 64  4e-10
REMARK gi|2781309|pdb|1YCS|B Chain B, P53-53bp2 Complex
REMARK 63  5e-10
REMARK pdb|1YCS|1YCS-B p53fragment: residues 97 - 287;
REMARK 63  5e-10
REMARK pdb|1AWJ|1AWJ itkfragment: sh3-proline domains;
REMARK 57  3e-08
REMARK pdb|1AOJ|1AOJ-A eps8fragment: sh3 domain; (src homology
REMARK 53  6e-07
REMARK gi|1827866|pdb|1TUC|    Alpha-Spectrin Src Homology 3 Domain,
REMARK 49  8e-06
REMARK pdb|1TUC|1TUC alpha-spectrinfragment: src homology 3 domain;
REMARK 49  8e-06
REMARK gi|1827865|pdb|1TUD|    Alpha-Spectrin Src Homology 3 Domain,
REMARK 47  4e-05
REMARK pdb|1TUD|1TUD alpha-spectrinfragment: src homology 3 domain;
REMARK 47  4e-05
REMARK gi|3318884|pdb|1BB9|    Crystal Structure Of The Sh3 Domain
REMARK 52  1e-06
REMARK pdb|1BB9|1BB9 amphiphysin 2fragment: sh3 domain;
REMARK 52  1e-06
REMARK pdb|1PNJ|1PNJ Phosphatidylinositol 3-kinase (p85-alpha
REMARK 49  8e-06
REMARK pdb|1PKS|1PKS Phosphatidylinositol 3-kinase (pi3k) (sh3
REMARK domain)...
REMARK 49  8e-06
REMARK pdb|1PHT|1PHT phosphatidylinositol 3-kinase p85-alpha
REMARK subunit(p...
REMARK 49  8e-06
REMARK Folding can be solved by homology modeling, refer to one
REMARK of the following links:
REMARK http://www.expasy.ch/swissmod/
REMARK http://guitar.rockefeller.edu/modeller/
MODEL  1  UNREFINED
PARENT NONE
TER
END


