
PFRMAT AL
TARGET T0101
AUTHOR 4216-9015-4014
REMARK Predictor remarks
METHOD 
METHOD Work by Kelley LA, MacCallum RM & Sternberg MJE
METHOD Biomolecular Modelling Laboratory
METHOD Imperial Cancer Research Fund
METHOD 44 Lincoln's Inn Fields
METHOD London WC2A 3PX, England 
METHOD Tel +44-(0)20-7269-3565 / 3242
METHOD FAX +44-(0)20-7269-3534
METHOD
METHOD Using the results from the 3D-PSSM server:
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD We received a high confidence (>95%) top ranking hit to the parent
METHOD 1dbg chain A. The automatic alignment has been manually edited
METHOD to preserve the hydrophobic core and the patterns of secondary 
METHOD structure.

MODEL 1
PARENT 1dbg_A
S   55 Q 26
S   56 V 27
F   57 V 28
N   58 A 29
A   59 S 30
P   60 N 31
M   61 E 32
S   62 T 33
F   63 L 34
S   64 Y 35
A   65 Q 36
A   66 V 37
M   67 V 38
A   68 K 39
A   69 E 40
V   70 V 41
N   71 K 42
P   72 P 43
G   73 G 44
E   74 G 45
L   75 L 46
I   76 V 47
L   77 Q 48
L   78 I 49
K   79 A 50
P   80 D 51
G   81 G 52
T   82 T 53
Y   83 Y 54
T   84 K 55
I   85 D 56
N   93 V 57
T   94 Q 58
I   95 L 59
T   96 I 60
F   97 V 61
N   98 S 62
K   99 N 63
S  100 S 64
G  101 G 65
K  102 K 66
D  103 S 67
G  104 G 68
A  105 P 70
P  106 I 71
I  107 T 72
Y  108 I 73
V  109 K 74
A  110 A 75
A  111 L 76
A  112 N 77
N  113 P 78
C  114 G 79
G  115 K 80
R  116 V 81
A  117 F 82
V  118 F 83
F  119 T 84
D  120 G 85
F  121 D 86
Y  133 A 87
G  134 K 88
F  135 V 89
Y  136 E 90
V  137 L 91
T  138 R 92
G  139 G 93
D  140 E 94
Y  141 H 95
W  142 L 96
Y  143 I 97
F  144 L 98
K  145 E 99
G  146 G 100
V  147 I 101
E  148 W 102
V  149 F 103
T  150 K 104
R  151 D 105
A  152 G 106
G  153 N 107
Y  154 R 108
Q  155 I 110
G  156 Q 111
A  157 A 112
Y  158 W 113
V  159 K 114
I  160 S 115
G  161 H 116
S  162 G 117
H  163 P 118
N  164 G 119
T  165 L 120
F  166 V 121
E  167 A 122
N  168 I 123
T  169 Y 124
A  170 G 125
T  177 S 126
G  178 Y 127
L  179 N 128
E  180 R 129
I  181 I 130
N  182 T 131
N  183 A 132
T  189 C 133
V  190 V 134
I  191 F 135
N  192 D 136
S  193 C 137
D  194 F 138
A  195 D 139
Y  196 E 140
R  197 A 141
K  203 N 142
N  204 S 143
G  205 A 144
S  206 Y 145
M  207 I 146
A  208 T 147
D  209 T 148
G  210 S 149
F  211 L 150
G  212 T 151
P  213 E 152
K  214 D 153
Q  215 G 154
K  216 K 155
Q  217 V 156
G  218 P 157
P  219 Q 158
G  220 H 159
N  221 C 160
R  222 R 161
F  223 I 162
V  224 D 163
G  225 H 164
C  226 C 165
R  227 S 166
A  228 F 167
W  229 T 168
E  230 D 169
N  231 K 170
S  232 I 171
D  233 T 172
D  240 F 173
S  241 D 174
P  242 Q 175
Q  243 V 176
K  244 I 177
V  245 N 178
V  246 L 179
I  247 N 180
E  248 N 181
N  249 T 182
S  250 A 183
W  251 R 184
A  252 A 185
F  253 I 186
R  254 K 187
N  255 D 188
G  256 G 189
I  257 S 190
N  258 V 191
Y  259 G 192
W  260 G 193
N  261 P 194
G  275 G 195
G  276 M 196
N  277 Y 197
Q  278 H 198
A  279 R 199
V  280 V 200
G  281 D 201
N  282 H 202
H  283 C 203
R  284 F 204
I  285 F 205
T  286 S 206
R  287 N 207
S  288 P 208
V  289 Q 209
A  290 K 210
F  291 P 211
G  292 G 212
N  293 N 213
V  294 A 214
S  295 G 215
K  296 G 216
G  297 G 217
F  298 I 218
D  299 R 219
Q  300 I 220
N  301 G 221
N  302 N 225
N  303 D 226
A  304 I 227
G  305 G 228
G  306 R 229
V  307 C 230
T  308 L 231
V  309 V 232
I  310 D 233
N  311 S 234
N  312 N 235
T  313 L 236
S  314 F 237
Y  315 M 238
K  316 R 239
N  317 Q 240
G  318 D 241
I  319 S 242
N  320 A 244
Y  321 E 245
G  322 I 246
F  323 I 247
G  324 T 248
S  325 S 249
N  326 K 250
V  327 S 251
Q  328 Q 252
K  332 E 253
H  333 N 254
Y  334 V 255
F  335 Y 256
R  336 Y 257
N  337 G 258
N  338 N 259
V  339 T 260
S  340 Y 261
L  341 L 262
S  342 N 263
A  343 C 264
S  344 Q 265
V  345 G 266
T  346 T 267
V  347 M 268
S  348 N 269
N  349 F 270
A  350 R 271
D  351 H 272
A  365 G 273
S  366 D 274
D  367 H 275
F  368 Q 276
V  369 V 277
S  370 A 278
L  371 I 279
D  372 N 280
T  373 N 281
S  374 F 282
L  375 Y 283
A  376 I 284
T  377 G 285
V  378 N 286
S  379 D 287
R  380 Q 288
D  381 G 291
N  382 Y 292
D  383 G 293
G  384 G 294
T  385 M 295
L  386 F 296
P  387 V 297
E  388 W 298
T  389 G 299
S  390 S 300
L  391 R 301
F  392 H 302
R  393 V 303
L  394 I 304
S  395 A 305
A  396 C 306
N  397 N 307
S  398 Y 308
K  399 F 309
L  400 E 310
I  401 L 311
N  402 S 312
A  403 E 313
G  404 T 314
T  405 R 318
K  406 G 319
E  407 N 320
S  408 A 321
N  409 A 322
I  410 L 323
S  411 Y 324
Y  412 L 325
S  413 N 326
G  414 P 327
S  415 G 328
A  416 A 329
P  417 M 330
D  418 A 331
L  419 S 332
G  420 E 333
A  421 H 334
F  422 A 335
E  423 L 336
R  424 A 337
N  425 F 338
TER
END


