
PFRMAT AL
TARGET T0101
AUTHOR 6305-9733-7289
REMARK similar to 1czf.
METHOD PSI-BLAST (Altschul et al., Nucl. Acids Res. 25, 3389-3402, 1997)
METHOD (-h 0.0005 -j 20) and iterative SCANPS
METHOD (Barton et al., 2000, http://barton.ebi.ac.uk/scanps/)
METHOD were run against a combined search set comprising the SWALL, PDB and ENSEMBL
METHOD sequence databases. In these runs, 1CZF (chain B) was identified as a
METHOD possible homologue. All sequences hit with an E-value of less than 0.0005
METHOD were collected and aligned all_against_all using AMPS
METHOD (Barton, G. J., Methods in Enzymology 183, 403-428, 1990.)
METHOD One sequence was removed from any pair sharing greater than 75%
METHOD identity. These sequences were combined with t0101 and 1CZF_B and
METHOD a multiple alignment was constructed by CLUSTALW (Higgins et al.,
METHOD Methods in Enz.266,383-402,1996.) The alignment between t0101
METHOD and 1CZF_B was extracted, edited and corrected by hand in the
METHOD Jalview alignment editor
METHOD (M. Clamp, URL: http://www2.ebi.ac.uk/~michele/jalview/contents.html).
METHOD Secondary structure information predicted for t0101 by JPRED2 (Cuff and
METHOD Barton, 2000, Proteins 40, 502-511,2000) was incorporated.
MODEL  1
PARENT 1czf_B
S 64 T B49
A 65 L B50
A 66 N B51
M 67 N B52
A 68 I B53
A 69 E B54
V 70 V B55
N 71 P B56
P 72 A B57
G 73 G B58
E 74 T B59
L 75 T B60
I 76 L B61
L 77 D B62
L 78 L B63
K 79 T B64
P 80 G B65
G 81 L B66
T 96 K B71
F 97 V B72
N 98 I B73
K 99 F B74
S 100 E B75
G 101 G B76
K 102 T B77
D 103 T B78
G 104 T B79
A 105 F B80
P 106 Q B81
I 107 Y B82
Y 108 E B83
V 109 E B84
A 110 W B85
A 111 A B86
A 112 G B87
F 119 M B92
D 120 S B93
F 121 G B94
S 122 E B95
F 123 H B96
P 124 I B97
D 125 T B98
S 126 V B99
Q 127 T B100
W 128 G B101
V 129 A B102
Y 133 H B105
G 134 L B106
F 135 I B107
Y 136 N B108
V 137 C B109
T 138 D B110
G 139 G B111
D 140 A B112
Y 141 R B113
W 142 W B114
Y 143 W B115
F 144 D B116
K 145 G B117
G 146 K B118
V 147 G B119
E 148 T B120
V 149 S B121
T 150 G B122
T 169 K B127
A 170 F B128
F 171 F B129
H 172 Y B130
H 173 A B131
N 174 H B132
R 175 G B133
N 176 L B134
T 177 D B135
G 178 S B136
L 179 S B137
E 180 S B138
I 181 I B139
N 182 T B140
N 183 G B141
G 184 L B142
G 185 N B143
S 186 I B144
Y 187 K B145
N 188 N B146
T 189 T B147
V 190 P B148
I 191 L B149
N 192 M B150
S 193 A B151
D 194 F B152
A 195 S B153
Y 196 V B154
R 197 Q B155
N 198 A B156
Y 199 N B157
D 200 D B158
P 201 I B159
K 202 T B160
K 203 F B161
N 204 T B162
G 205 D B163
S 206 V B164
M 207 T B165
A 208 I B166
D 209 N B167
G 210 N B168
F 211 A B169
G 212 D B170
G 225 G B175
C 226 G B176
R 227 H B177
A 228 N B178
W 229 T B179
E 230 D B180
N 231 A B181
S 232 F B182
D 233 D B183
D 234 V B184
G 235 G B185
F 236 N B186
D 237 S B187
L 238 V B188
F 239 G B189
D 240 V B190
S 241 N B191
P 242 I B192
Q 243 I B193
K 244 K B194
V 245 P B195
V 246 W B196
I 247 V B197
E 248 H B198
S 263 C B203
A 264 L B204
F 265 A B205
A 266 V B206
G 267 N B207
N 268 S B208
G 269 G B209
N 270 E B210
G 271 N B211
F 272 I B212
K 273 W B213
L 274 F B214
G 275 T B215
G 276 G B216
N 277 G B217
Q 278 T B218
A 279 C B219
V 280 I B220
G 281 G B221
N 282 G B222
H 283 H B223
R 284 G B224
I 285 L B225
T 286 S B226
R 287 I B227
S 288 G B228
V 289 S B229
A 290 V B230
N 302 N B235
N 303 N B236
A 304 V B237
G 305 V B238
G 306 K B239
V 307 N B240
T 308 V B241
V 309 T B242
I 310 I B243
N 311 E B244
N 312 H B245
T 313 S B246
S 314 T B247
Y 315 V B248
K 316 S B249
N 317 N B250
G 318 S B251
I 319 E B252
N 320 N B253
Y 321 A B254
G 322 V B255
F 323 R B256
G 324 I B257
S 325 K B258
N 326 T B259
V 327 I B260
S 340 G B265
L 341 S B266
S 342 V B267
A 343 S B268
S 344 E B269
V 345 I B270
T 346 T B271
V 347 Y B272
S 348 S B273
N 349 N B274
A 350 I B275
D 351 V B276
A 352 M B277
K 353 S B278
S 354 G B279
N 355 I B280
S 356 S B281
W 357 D B282
D 358 Y B283
T 359 G B284
G 360 V B285
P 361 V B286
A 362 I B287
A 363 Q B288
S 364 Q B289
A 365 D B290
S 366 Y B291
D 367 E B292
F 368 D B293
V 369 G B294
S 370 K B295
L 371 P B296
D 372 T B297
T 373 G B298
S 374 K B299
T 377 V B304
V 378 T B305
S 379 I B306
R 380 Q B307
D 381 D B308
N 382 V B309
D 383 K B310
G 384 L B311
T 385 E B312
L 386 S B313
P 387 V B314
E 388 T B315
T 389 G B316
S 390 S B317
L 391 V B318
F 392 D B319
R 393 S B320
L 394 G B321
S 395 A B322
A 396 T B323
N 397 E B324
S 398 I B325
K 399 Y B326
L 400 L B327
I 401 L B328
N 402 C B329
A 403 G B330
Y 412 S B335
S 413 D B336
G 414 W B337
S 415 T B338
A 416 W B339
P 417 D B340
D 418 D B341
L 419 V B342
G 420 K B343
A 421 V B344
F 422 T B345
E 423 G B346
R 424 G B347
N 425 K B348
TER
END


