
PFRMAT AL
TARGET T0101
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 2pec
T  38    T  88
K  39    K  89
R  40    G  90
I  41    I  91
Y  42    T  92
Y  43    I  93
V  44    I  94
A  45    G  95
P  46    A  96
N  47    N  97
G  48    G  98
N  49    S  99
S  50    S 100
S  51    A 101
N  52    N 102
P  86    P 124
Y  87    G 125
T  88    G 126
Q  89    A 127
G  90    K 128
K  91    D 129
G  92    G 130
N  93    D 131
T  94    M 132
I  95    I 133
T  96    R 134
F  97    V 135
N  98    D 136
K  99    D 137
S 100    S 138
P 106    E 147
I 107    L 148
Y 108    F 149
V 109    A 150
A 110    A 151
A 111    N 152
A 112    H 153
N 113    E 154
C 114    C 155
G 115    G 157
R 116    T 158
A 117    P 159
V 118    D 160
F 119    N 161
D 120    D 162
F 121    T 163
S 122    T 164
F 123    F 165
P 124    E 166
D 125    S 167
S 126    A 168
Q 127    V 169
W 128    D 170
V 129    I 171
Q 130    K 172
A 131    G 173
S 132    A 174
Y 133    S 175
G 134    N 176
Y 136    T 177
V 137    V 178
T 138    T 179
G 139    V 180
D 140    S 181
Y 141    Y 182
W 142    N 183
Y 143    Y 184
F 144    I 185
K 145    H 186
G 146    G 187
V 147    V 188
E 148    K 189
R 151    K 190
A 152    V 191
G 153    G 192
Y 154    L 193
Q 155    D 194
G 156    G 195
T 165    T 201
F 166    G 202
E 167    R 203
N 168    N 204
T 169    I 205
A 170    T 206
F 171    Y 207
H 172    H 208
H 173    H 209
N 174    N 210
R 175    Y 211
G 178    R 218
L 179    L 219
E 180    P 220
I 181    L 221
N 182    Q 222
N 183    R 223
G 184    G 224
G 185    G 225
S 186    A 229
Y 187    Y 230
N 188    N 231
T 189    N 232
V 190    L 233
I 191    Y 234
N 192    T 235
S 193    N 236
D 194    I 237
A 195    T 238
Y 196    G 239
R 197    S 240
N 198    G 241
Y 199    L 242
D 200    N 243
P 201    V 244
K 202    R 245
K 203    Q 246
N 204    N 247
G 205    G 248
TER
END


