
PFRMAT AL
TARGET T0101
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1rmg
G  81    G   7
T  82    P   8
Y  83    L   9
T  84    T  10
I  85    S  11
P  86    A  12
Y  87    S  13
T  88    T  14
Q  89    K  15
G  90    G  16
K  91    A  17
G  92    T  18
N  93    K  19
T  94    T  20
I  95    C  21
T  96    N  22
F  97    I  23
N  98    L  24
K  99    S  25
S 100    Y  26
G 101    G  27
K 102    A  28
D 103    V  29
G 104    A  30
A 105    P  38
P 106    A  39
I 107    I  40
Y 108    T  41
V 109    S  42
A 110    A  43
A 111    W  44
A 112    A  45
N 113    A  46
C 114    C  47
G 115    K  48
P 124    S  49
D 125    G  50
S 126    G  51
Q 127    L  52
W 128    V  53
V 129    Y  54
Q 130    I  55
A 131    P  56
S 132    S  57
Y 133    G  58
G 134    N  59
F 135    Y  60
Y 136    A  61
V 137    L  62
T 138    N  63
G 139    T  64
D 140    W  65
Y 141    V  66
W 142    T  67
Y 143    L  68
F 144    T  69
K 145    G  70
G 146    G  71
V 147    T  74
E 148    A  75
V 149    I  76
T 150    Q  77
R 151    L  78
A 152    D  79
G 153    G  80
Y 154    I  81
Q 155    I  82
G 156    Y  83
A 157    R  84
Y 158    T  85
V 159    G  86
I 160    T  87
G 161    A  88
S 162    S  89
H 163    G  90
N 164    N  91
A 170    M  92
F 171    I  93
H 172    A  94
H 173    V  95
N 174    T  96
R 175    D  97
N 176    T  98
T 177    T  99
G 178    D 100
L 179    F 101
E 180    E 102
I 181    L 103
N 182    F 104
N 183    S 105
G 184    S 106
G 185    T 107
S 186    S 108
Y 187    K 109
N 188    G 110
T 189    A 111
V 190    V 112
D 209    Q 113
G 210    G 114
F 211    F 115
G 212    G 116
P 213    Y 117
K 214    V 118
Q 215    Y 119
K 216    H 120
Q 217    A 121
G 218    E 122
P 219    G 123
G 220    T 124
N 221    Y 125
R 222    G 126
F 223    A 127
V 224    R 128
G 225    I 129
C 226    L 130
R 227    R 131
A 228    L 132
W 229    T 133
E 230    D 134
N 231    V 135
S 232    T 136
D 233    H 137
D 234    H 141
G 235    D 142
F 236    I 143
D 237    I 144
L 238    L 145
F 239    V 146
D 240    D 147
S 241    A 148
P 242    P 149
Q 243    A 150
K 244    F 151
V 245    H 152
V 246    F 153
I 247    T 154
E 248    M 155
N 249    D 156
S 250    T 157
W 251    C 158
A 252    S 159
F 253    D 160
R 254    G 161
N 255    E 162
G 256    V 163
I 257    Y 164
N 258    N 165
Y 259    M 166
W 260    A 167
N 261    I 168
D 262    R 169
S 263    G 170
A 264    G 171
F 265    N 172
A 266    E 173
G 267    G 174
N 268    G 175
G 269    L 176
N 270    D 177
G 271    G 178
F 272    I 179
K 273    D 180
L 274    V 181
G 275    W 182
G 276    G 183
N 277    S 184
Q 278    N 185
A 279    I 186
V 280    W 187
G 281    V 188
N 282    H 189
H 283    D 190
R 284    V 191
I 285    E 192
F 291    V 193
G 292    T 194
N 293    N 195
V 294    K 196
S 295    D 197
K 296    E 198
G 297    C 199
F 298    V 200
D 299    T 201
Q 300    V 202
N 301    K 203
N 302    S 204
N 303    P 205
A 304    A 206
G 305    N 207
G 306    N 208
V 307    I 209
T 308    L 210
V 309    V 211
I 310    E 212
N 311    S 213
N 312    I 214
T 313    Y 215
S 314    C 216
Y 315    N 217
K 316    W 218
N 317    G 220
G 318    G 221
I 319    C 222
N 320    A 223
Y 321    M 224
G 322    G 225
F 323    S 226
G 324    L 227
S 325    G 228
N 326    A 229
V 327    D 230
Q 328    T 231
S 329    D 232
G 330    V 233
Q 331    T 234
K 332    D 235
H 333    I 236
Y 334    V 237
F 335    Y 238
R 336    R 239
N 337    N 240
N 338    V 241
T 346    Y 242
V 347    T 243
S 348    W 244
N 349    S 245
A 350    S 246
D 351    N 247
A 352    Q 248
K 353    M 249
S 354    Y 250
N 355    M 251
S 356    I 252
W 357    K 253
D 358    S 254
T 359    N 255
G 360    G 256
P 361    G 257
A 362    S 258
A 363    G 259
S 364    T 260
A 365    V 261
S 366    S 262
TER
END


