
PFRMAT AL
TARGET T0101
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  4
PARENT 1rmg
F  63    I  40
S  64    T  41
A  65    S  42
A  66    A  43
M  67    W  44
A  68    A  45
A  69    A  46
V  70    C  47
N  71    K  48
P  72    S  49
G  73    G  50
E  74    G  51
L  75    L  52
I  76    V  53
L  77    Y  54
L  78    I  55
K  79    P  56
P  80    S  57
G  81    G  58
T  82    N  59
Y  83    Y  60
T  84    A  61
I  85    L  62
P  86    T  67
Y  87    L  68
T  88    T  69
Q  89    G  70
G  90    G  71
K  91    S  72
G  92    A  73
N  93    T  74
T  94    A  75
I  95    I  76
T  96    Q  77
F  97    L  78
N  98    D  79
K  99    T  85
S 100    G  86
G 101    T  87
K 102    A  88
D 103    S  89
G 104    G  90
A 105    N  91
P 106    M  92
I 107    I  93
Y 108    A  94
V 109    V  95
A 110    T  96
A 111    D  97
A 112    T  98
N 113    S 106
C 114    T 107
G 115    S 108
R 116    K 109
A 117    G 110
V 118    A 111
F 119    V 112
D 120    Q 113
S 122    G 114
F 123    F 115
P 124    G 116
D 125    Y 117
S 126    V 118
Q 127    Y 119
W 128    H 120
V 129    A 121
Q 130    E 122
A 131    G 123
S 132    T 124
Y 133    Y 125
G 134    G 126
F 135    L 132
Y 136    T 133
V 137    D 134
T 138    V 135
G 139    T 136
D 140    H 137
Y 141    F 138
W 142    S 139
F 144    V 140
K 145    H 141
G 146    D 142
V 147    I 143
E 148    I 144
V 149    L 145
T 150    V 146
R 151    D 147
A 152    A 148
G 153    P 149
Y 154    A 150
Q 155    F 151
G 156    C 158
A 157    S 159
Y 158    D 160
V 159    G 161
I 160    E 162
G 161    V 163
S 162    Y 164
H 163    N 165
N 164    M 166
T 165    A 167
F 166    I 168
E 167    R 169
N 168    G 170
H 172    G 171
H 173    N 172
N 174    E 173
R 175    G 174
N 176    G 175
T 177    L 176
G 178    D 177
L 179    G 178
I 181    I 179
N 182    D 180
N 183    V 181
G 184    W 182
G 185    G 183
S 186    S 184
Y 187    N 185
N 188    I 186
T 189    W 187
V 190    V 188
I 191    H 189
N 192    D 190
S 193    V 191
D 194    E 192
A 195    V 193
Y 196    T 194
R 197    N 195
N 198    K 196
Y 199    D 197
D 200    E 198
P 201    T 201
K 202    V 202
K 203    K 203
N 204    S 204
G 205    P 205
S 206    A 206
TER
END


