
PFRMAT AL
TARGET T0101
AUTHOR 1205-3016-5241
METHOD Using a database which X'ed out sequence regions within coiled-coils,
METHOD transmembrane, and low entropy, SENSER was able to identify a relationship
METHOD between pectate lyase and PECTATE LYASE C FROM ERWINIA CHRYSANTHEMI (1pluA)
METHOD through recursive searching. An alignment
METHOD was automatically generated with HMMer using profiles
METHOD of the target and pdb families.
MODEL 1
PARENT 1pluA
N  52    A   1
N  53    T   2
G  54    D   3
S  55    T   4
S  56    G   5
F  57    G   6
N  58    Y   7
A  59    A   8
P  60    A   9
M  61    T  10
S  62    A  11
F  63    G  12
S  64    G  13
A  65    N  14
A  66    V  15
M  67    T  16
A  68    G  17
A  69    A  18
V  70    V  19
N  71    S  20
P  72    K  21
G  73    T  22
E  74    A  23
L  75    T  24
I  76    S  25
L  77    M  26
L  78    Q  27
K  79    D  28
P  80    I  29
G  81    V  30
T  82    N  31
Y  83    I  32
T  84    I  33
I  85    D  34
P  86    A  35
Y  87    A  36
T  88    R  37
Q  89    L  38
G  90    D  39
K  91    A  40
G  92    N  41
N  93    G  42
T  94    K  43
I  95    K  44
T  96    V  45
F  97    K  46
N  98    G  47
K  99    G  48
S 100    A  49
G 101    Y  50
K 102    P  51
D 103    L  52
G 104    V  53
A 105    I  54
P 106    T  55
I 107    Y  56
Y 108    T  57
V 109    G  58
A 110    N  59
A 111    E  60
A 112    D  61
N 113    S  62
C 114    L  63
G 115    I  64
R 116    N  65
A 117    A  66
V 118    A  67
F 119    A  68
D 120    A  69
F 121    N  70
S 122    I  71
F 123    C  72
P 124    G  73
D 125    Q  74
S 126    W  75
Q 127    S  76
W 128    K  77
V 129    D  78
Q 130    P  79
A 131    R  80
S 132    G  81
Y 133    V  82
G 134    E  83
F 135    I  84
Y 136    K  85
V 137    E  86
T 138    F  87
G 139    T  88
D 140    K  89
Y 141    G  90
W 142    I  91
Y 143    T  92
F 144    I  93
K 145    I  94
G 146    G  95
V 147    A  96
E 148    N  97
V 149    G  98
T 150    S  99
R 151    S 100
A 152    A 101
G 153    N 102
Y 154    F 103
Q 155    G 104
G 156    I 105
A 157    W 106
Y 158    I 107
V 159    K 108
I 160    K 109
G 161    S 110
S 162    S 111
H 163    D 112
N 164    V 113
T 165    V 114
F 166    V 115
E 167    Q 116
N 168    N 117
T 169    M 118
A 170    R 119
F 171    I 120
H 172    G 121
H 173    Y 122
N 174    L 123
R 175    P 124
G 178    M 132
L 179    I 133
E 180    R 134
I 181    V 135
N 182    D 136
N 183    D 137
G 184    S 138
Y 187    P 139
N 188    N 140
T 189    V 141
V 190    L 148
I 191    F 149
Y 196    A 150
R 197    A 151
N 198    N 152
Y 199    H 153
D 200    E 154
P 201    C 155
K 202    D 156
K 203    G 157
N 204    T 158
G 205    P 159
S 206    D 160
M 207    N 161
A 208    D 162
D 209    T 163
G 210    T 164
Q 215    E 166
K 216    S 167
Q 217    A 168
F 236    V 169
D 237    D 170
L 238    I 171
F 239    K 172
D 240    G 173
S 241    A 174
P 242    S 175
K 244    T 177
V 245    V 178
V 246    T 179
I 247    V 180
E 248    S 181
N 249    Y 182
S 250    N 183
W 251    Y 184
A 252    I 185
F 253    H 186
R 254    G 187
N 255    V 188
G 256    K 189
I 257    K 190
Y 259    L 193
W 260    D 194
N 261    G 195
D 262    S 196
S 263    S 197
A 264    S 198
F 265    S 199
A 266    D 200
G 267    T 201
N 268    G 202
G 269    R 203
N 270    N 204
A 279    I 205
V 280    T 206
G 281    Y 207
N 282    H 208
H 283    H 209
R 284    N 210
I 285    V 227
T 286    H 228
A 290    A 229
F 291    Y 230
G 292    N 231
N 293    N 232
T 308    L 233
V 309    Y 234
I 310    T 235
N 311    N 236
N 312    I 237
T 313    T 238
S 314    G 239
Y 315    S 240
K 316    G 241
N 317    L 242
G 318    N 243
I 319    V 244
N 320    T 297
Y 321    A 298
G 322    D 299
F 323    T 300
G 324    K 301
S 325    P 302
N 326    Y 303
V 327    V 304
Q 328    N 305
S 329    A 306
G 330    D 307
Q 331    S 308
K 332    W 309
H 333    T 310
Y 334    S 311
F 335    T 312
R 336    G 313
N 337    T 314
N 338    F 315
V 339    P 316
S 340    T 317
L 341    V 318
S 342    A 319
A 343    Y 320
S 344    N 321
V 345    Y 322
T 346    S 323
V 347    P 324
S 348    V 325
N 349    S 326
A 350    A 327
D 351    Q 328
A 352    C 329
K 353    V 330
S 354    K 331
N 355    D 332
S 356    K 333
W 357    L 334
D 358    P 335
T 359    G 336
G 360    Y 337
P 361    A 338
A 362    G 339
A 363    V 340
S 364    G 341
A 365    K 342
S 366    N 343
D 367    L 344
F 368    A 345
V 369    T 346
S 370    L 347
L 371    T 348
D 372    S 349
T 373    T 350
S 374    A 351
L 375    C 352
TER
END

