
PFRMAT SS
TARGET T0101
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0101.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 10.0589
METHOD
MODEL 1
A C 0.775
D C 0.784
C C 0.653
S C 0.655
S C 0.608
D C 0.594
L C 0.461
T C 0.461
S C 0.450
G C 0.485
I C 0.479
S C 0.570
T C 0.624
K C 0.687
R C 0.651
I E 0.596
Y E 0.838
Y E 0.932
V E 0.891
A E 0.641
P C 0.651
N C 0.869
G C 0.817
N C 0.786
S C 0.802
S C 0.855
N C 0.921
N C 0.914
G C 0.849
S C 0.729
S C 0.709
F C 0.714
N C 0.801
A C 0.865
P C 0.491
M H 0.598
S H 0.680
F H 0.972
S H 0.981
A H 0.985
A H 0.971
M H 0.961
A H 0.946
A H 0.860
V H 0.648
N C 0.758
P C 0.847
G C 0.886
E C 0.746
L E 0.762
I E 0.927
L E 0.928
L E 0.794
K C 0.599
P C 0.795
G C 0.705
T E 0.657
Y E 0.775
T E 0.704
I E 0.614
P C 0.618
Y C 0.785
T C 0.862
Q C 0.876
G C 0.903
K C 0.792
G C 0.720
N C 0.590
T E 0.736
I E 0.828
T E 0.820
F E 0.783
N E 0.542
K C 0.564
S C 0.797
G C 0.913
K C 0.737
D C 0.704
G C 0.778
A C 0.734
P C 0.523
I E 0.837
Y E 0.949
V E 0.965
A E 0.897
A E 0.681
A C 0.821
N C 0.922
C C 0.924
G C 0.889
R E 0.646
A E 0.908
V E 0.960
F E 0.963
D E 0.910
F E 0.760
S C 0.538
F C 0.789
P C 0.862
D C 0.708
S C 0.487
Q H 0.568
W H 0.539
V H 0.495
Q H 0.521
A H 0.553
S C 0.473
Y C 0.597
G C 0.689
F E 0.616
Y E 0.817
V E 0.867
T E 0.627
G C 0.527
D E 0.583
Y E 0.650
W E 0.582
Y E 0.491
F C 0.545
K C 0.698
G C 0.627
V E 0.573
E E 0.698
V E 0.663
T E 0.560
R C 0.487
A C 0.562
G C 0.552
Y C 0.683
Q C 0.726
G C 0.567
A E 0.766
Y E 0.887
V E 0.894
I E 0.758
G C 0.552
S C 0.843
H H 0.491
N H 0.708
T H 0.811
F H 0.852
E H 0.871
N H 0.904
T H 0.888
A H 0.866
F H 0.880
H H 0.749
H H 0.581
N C 0.496
R C 0.576
N C 0.825
T C 0.749
G C 0.540
L E 0.734
E E 0.859
I E 0.759
N C 0.522
N C 0.852
G C 0.873
G C 0.584
S C 0.587
Y C 0.529
N C 0.528
T E 0.565
V E 0.710
I E 0.771
N E 0.730
S C 0.445
D C 0.451
A C 0.437
Y C 0.454
R C 0.655
N C 0.858
Y C 0.777
D C 0.909
P C 0.918
K C 0.919
K C 0.889
N C 0.950
G C 0.929
S C 0.857
M C 0.822
A C 0.765
D C 0.730
G C 0.629
F C 0.543
G H 0.370
P E 0.410
K E 0.511
Q E 0.461
K C 0.465
Q C 0.650
G C 0.948
P C 0.951
G C 0.904
N C 0.556
R E 0.764
F E 0.869
V E 0.814
G E 0.827
C E 0.896
R E 0.924
A E 0.922
W E 0.878
E E 0.755
N E 0.505
S C 0.605
D C 0.735
D C 0.776
G C 0.833
F C 0.728
D C 0.833
L C 0.852
F C 0.898
D C 0.895
S C 0.895
P C 0.672
Q E 0.599
K E 0.782
V E 0.965
V E 0.982
I E 0.965
E E 0.804
N C 0.784
S C 0.815
W E 0.534
A E 0.605
F E 0.539
R C 0.576
N C 0.763
G C 0.773
I C 0.487
N E 0.525
Y C 0.480
W C 0.563
N C 0.686
D C 0.598
S E 0.621
A E 0.696
F E 0.692
A E 0.544
G C 0.702
N C 0.869
G C 0.872
N C 0.548
G E 0.580
F E 0.807
K E 0.825
L E 0.657
G C 0.636
G C 0.780
N C 0.792
Q C 0.749
A C 0.518
V E 0.515
G C 0.523
N C 0.631
H E 0.536
R E 0.828
I E 0.895
T E 0.891
R E 0.667
S E 0.564
V E 0.854
A E 0.898
F E 0.910
G E 0.772
N E 0.519
V C 0.721
S C 0.747
K C 0.625
G C 0.708
F C 0.562
D C 0.516
Q C 0.493
N E 0.568
N E 0.497
N C 0.750
A C 0.800
G C 0.783
G C 0.509
V E 0.783
T E 0.913
V E 0.902
I E 0.700
N C 0.582
N C 0.655
T E 0.727
S E 0.776
Y E 0.669
K C 0.614
N C 0.892
G C 0.919
I E 0.493
N E 0.753
Y E 0.769
G C 0.516
F C 0.733
G C 0.600
S E 0.784
N E 0.832
V E 0.738
Q C 0.661
S C 0.913
G C 0.917
Q C 0.626
K C 0.494
H E 0.626
Y E 0.667
F E 0.608
R E 0.464
N C 0.485
N E 0.608
V E 0.749
S E 0.813
L E 0.733
S C 0.510
A C 0.658
S C 0.677
V C 0.439
T E 0.539
V E 0.471
S C 0.602
N C 0.626
A C 0.505
D C 0.424
A E 0.448
K C 0.514
S C 0.683
N C 0.841
S C 0.843
W C 0.750
D C 0.719
T C 0.555
G E 0.486
P E 0.506
A E 0.632
A E 0.722
S E 0.744
A E 0.541
S C 0.632
D C 0.621
F C 0.417
V E 0.485
S E 0.512
L E 0.398
D C 0.583
T C 0.497
S H 0.501
L H 0.581
A H 0.570
T H 0.585
V H 0.570
S H 0.483
R C 0.567
D C 0.626
N C 0.593
D C 0.604
G C 0.799
T C 0.755
L C 0.868
P C 0.792
E C 0.515
T E 0.608
S E 0.748
L E 0.785
F E 0.767
R E 0.656
L E 0.509
S C 0.667
A C 0.811
N C 0.882
S C 0.839
K C 0.733
L E 0.468
I E 0.528
N C 0.487
A C 0.573
G C 0.468
T E 0.591
K E 0.662
E E 0.523
S C 0.503
N C 0.522
I E 0.523
S E 0.571
Y E 0.549
S C 0.566
G C 0.727
S C 0.718
A C 0.609
P C 0.577
D H 0.472
L C 0.515
G C 0.493
A C 0.440
F C 0.470
E C 0.537
R C 0.752
N C 0.951
END

