
PFRMAT SS
TARGET T0101
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
A C 0.98
D C 0.83
C C 0.64
S C 0.52
S C 0.37
D C 0.37
L C 0.38
T C 0.33
S C 0.23
G C 0.18
I C 0.05
S C 0.09
T C 0.25
K C 0.28
R C 0.28
I C 0.15
Y C 0.11
Y E 0.48
V E 0.78
A C 0.71
P C 0.81
N C 0.87
G C 0.83
N C 0.78
S C 0.75
S C 0.70
N C 0.78
N C 0.87
G C 0.89
S C 0.86
S C 0.82
F C 0.80
N C 0.70
A C 0.82
P C 0.44
M C 0.16
S C 0.20
F H 0.83
S H 0.86
A H 0.88
A H 0.90
M H 0.88
A H 0.62
A H 0.43
V H 0.23
N C 0.68
P C 0.91
G C 0.93
E C 0.43
L E 0.68
I E 0.91
L E 0.90
L E 0.51
K C 0.58
P C 0.91
G C 0.80
T C 0.26
Y E 0.56
T E 0.89
I E 0.83
P E 0.68
Y C 0.17
T C 0.56
Q C 0.69
G C 0.85
K C 0.74
G C 0.65
N C 0.63
T E 0.25
I E 0.37
T E 0.53
F E 0.60
N C 0.03
K C 0.42
S C 0.65
G C 0.90
K C 0.92
D C 0.87
G C 0.85
A C 0.69
P E 0.66
I E 0.87
Y E 0.87
V E 0.94
A E 0.87
A E 0.39
A C 0.45
N C 0.89
C C 0.92
G C 0.88
R C 0.50
A E 0.56
V E 0.70
F E 0.65
D E 0.12
F C 0.17
S C 0.36
F C 0.54
P C 0.54
D C 0.37
S C 0.29
Q C 0.21
W C 0.15
V C 0.11
Q C 0.23
A C 0.32
S C 0.48
Y C 0.75
G C 0.68
F E 0.45
Y E 0.51
V E 0.90
T E 0.90
G E 0.89
D E 0.72
Y E 0.84
W E 0.90
Y E 0.88
F E 0.52
K C 0.48
G C 0.72
V E 0.78
E E 0.86
V C 0.40
T C 0.41
R C 0.70
A C 0.72
G C 0.57
Y C 0.37
Q C 0.31
G C 0.15
A E 0.17
Y E 0.79
V E 0.65
I E 0.20
G C 0.66
S C 0.84
H C 0.81
N C 0.58
T E 0.02
F E 0.57
E E 0.89
N E 0.79
T E 0.66
A E 0.90
F E 0.89
H E 0.92
H E 0.63
N C 0.34
R C 0.78
N C 0.86
T C 0.81
G C 0.69
L C 0.01
E C 0.10
I C 0.27
N C 0.36
N C 0.73
G C 0.74
G C 0.43
S C 0.41
Y C 0.35
N E 0.47
T E 0.73
V E 0.85
I E 0.92
N E 0.75
S E 0.67
D E 0.30
A C 0.07
Y C 0.17
R C 0.63
N C 0.80
Y C 0.36
D C 0.87
P C 0.85
K C 0.86
K C 0.82
N C 0.83
G C 0.66
S C 0.43
M C 0.44
A C 0.38
D C 0.35
G C 0.73
F C 0.34
G E 0.36
P E 0.46
K E 0.61
Q E 0.82
K E 0.70
Q E 0.82
G C 0.81
P C 0.88
G C 0.77
N C 0.37
R E 0.82
F E 0.89
V E 0.51
G E 0.19
C E 0.08
R E 0.78
A E 0.76
W E 0.73
E E 0.34
N C 0.42
S C 0.77
D C 0.89
D C 0.76
G C 0.65
F C 0.12
D C 0.12
L C 0.26
F C 0.30
D C 0.22
S C 0.44
P C 0.67
Q C 0.74
K C 0.57
V E 0.76
V E 0.92
I E 0.94
E E 0.78
N C 0.23
S C 0.17
W E 0.09
A E 0.42
F E 0.33
R C 0.35
N C 0.78
G C 0.23
I E 0.49
N E 0.01
Y E 0.15
W C 0.53
N C 0.78
D C 0.66
S C 0.20
A C 0.62
F C 0.65
A C 0.76
G C 0.53
N C 0.64
G C 0.80
N C 0.65
G C 0.18
F E 0.28
K E 0.47
L E 0.35
G E 0.14
G C 0.05
N C 0.14
Q C 0.23
A C 0.45
V C 0.30
G C 0.18
N C 0.11
H E 0.22
R E 0.88
I E 0.87
T E 0.78
R C 0.47
S C 0.35
V E 0.80
A E 0.91
F E 0.35
G C 0.03
N C 0.74
V C 0.57
S C 0.13
K C 0.01
G E 0.02
F E 0.18
D E 0.27
Q E 0.32
N C 0.55
N C 0.46
N C 0.77
A C 0.84
G C 0.78
G C 0.33
V E 0.56
T E 0.82
V E 0.69
I E 0.36
N C 0.49
N C 0.33
T E 0.38
S E 0.63
Y E 0.69
K E 0.16
N C 0.62
G C 0.07
I E 0.29
N E 0.47
Y E 0.23
G C 0.10
F C 0.33
G C 0.47
S C 0.64
N C 0.77
V C 0.84
Q C 0.70
S C 0.72
G C 0.59
Q E 0.22
K E 0.19
H E 0.02
Y E 0.51
F E 0.37
R E 0.40
N C 0.20
N C 0.49
V E 0.60
S E 0.47
L E 0.05
S C 0.13
A C 0.24
S C 0.13
V C 0.16
T C 0.01
V C 0.09
S C 0.09
N C 0.26
A C 0.12
D C 0.01
A C 0.10
K C 0.08
S C 0.22
N C 0.30
S C 0.40
W C 0.44
D C 0.64
T C 0.75
G C 0.50
P E 0.24
A E 0.44
A E 0.43
S E 0.11
A E 0.02
S E 0.19
D E 0.12
F E 0.71
V E 0.90
S E 0.88
L E 0.70
D C 0.09
T C 0.54
S C 0.04
L C 0.17
A C 0.11
T E 0.21
V E 0.52
S E 0.31
R C 0.04
D C 0.61
N C 0.86
D C 0.90
G C 0.90
T C 0.81
L C 0.08
P C 0.02
E C 0.07
T E 0.04
S E 0.23
L E 0.36
F E 0.70
R E 0.51
L E 0.64
S C 0.22
A C 0.46
N C 0.68
S C 0.64
K C 0.02
L E 0.09
I E 0.12
N C 0.02
A C 0.42
G C 0.58
T C 0.63
K C 0.57
E C 0.49
S C 0.56
N C 0.32
I C 0.01
S E 0.16
Y E 0.12
S C 0.58
G C 0.77
S C 0.82
A C 0.89
P C 0.80
D C 0.66
L C 0.53
G C 0.58
A C 0.46
F C 0.31
E C 0.36
R C 0.77
N C 0.97
END

