
PFRMAT AL
TARGET T0102
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1doq_A
M    1 Q 248
A    2 E 249
K    3 E 250
E    4 E 251
F    5 L 252
G    6 D 253
I    7 L 254
P    8 P 255
A    9 L 256
A   10 E 257
V   11 E 258
A   12 L 259
G   13 G 260
T   14 R 264
V   15 V 265
L   16 L 266
N   17 H 267
V   18 S 268
V   19 L 269
E   20 K 270
A   21 E 271
G   22 E 272
G   23 G 273
T   26 I 274
T   27 E 275
I   28 S 276
V   29 V 277
S   30 R 278
I   31 A 279
L   32 L 280
T   33 L 281
A   34 A 282
V   35 L 283
G   36 N 284
S   37 L 285
G   38 K 286
G   39 D 287
L   40 L 288
S   41 K 289
L   42 N 290
L   43 I 291
A   44 P 292
A   45 G 293
A   46 I 294
G   47 G 295
R   48 E 296
E   49 R 297
S   50 S 298
I   51 L 299
K   52 E 300
A   53 E 301
L   55 I 302
K   56 K 303
K   57 E 304
E   58 A 305
I   59 L 306
K   60 E 307
K   61 K 308
K   62 K 309
G   63 G 310
K   64 K 314
R   65 E 315
TER
END

