
PFRMAT AL
TARGET T0102
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1doq_A
P   8    P 255
A   9    L 256
A  10    E 257
V  11    E 258
A  12    L 259
G  13    G 260
T  14    L 261
V  15    S 262
L  16    T 263
N  17    R 264
V  18    V 265
V  19    L 266
E  20    H 267
A  21    S 268
G  22    L 269
G  23    E 271
W  24    E 272
V  25    G 273
T  26    I 274
T  27    E 275
I  28    S 276
V  29    V 277
S  30    R 278
I  31    A 279
L  32    L 280
T  33    L 281
A  34    A 282
V  35    L 283
G  36    N 284
S  37    L 285
G  38    K 286
G  39    D 287
L  40    L 288
S  41    K 289
L  42    N 290
L  43    I 291
A  44    P 292
A  45    G 293
A  46    I 294
G  47    G 295
E  49    E 296
S  50    R 297
I  51    S 298
K  52    L 299
A  53    E 300
Y  54    E 301
L  55    I 302
K  56    K 303
K  57    E 304
E  58    A 305
I  59    L 306
K  60    E 307
K  61    K 308
K  62    K 309
G  63    G 310
K  64    F 311
TER
END


