
PFRMAT AL
TARGET T0102
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 2tct
E    4 A 2
F    5 R 3
G    6 L 4
I    7 N 5
P    8 R 6
A    9 E 7
A   10 S 8
V   11 V 9
A   12 I 10
G   13 D 11
T   14 A 12
V   15 A 13
L   16 L 14
N   17 E 15
V   18 L 16
V   19 L 17
E   20 N 18
A   21 E 19
G   22 T 20
G   23 G 21
W   24 I 22
V   25 G 24
T   26 L 25
T   27 T 26
I   28 T 27
V   29 R 28
S   30 K 29
I   31 L 30
L   32 A 31
T   33 Q 32
A   34 K 33
V   35 L 34
G   36 G 35
S   37 I 36
G   38 E 37
G   39 Q 38
L   40 P 39
S   41 T 40
L   42 L 41
L   43 Y 42
A   44 W 43
A   45 H 44
A   46 K 46
G   47 N 47
R   48 K 48
E   49 R 49
S   50 A 50
I   51 L 51
K   52 D 53
A   53 A 54
Y   54 L 55
L   55 A 56
K   56 V 57
K   57 E 58
E   58 I 59
I   59 L 60
K   60 A 61
K   61 R 62
K   62 H 63
G   63 H 64
K   64 D 65
R   65 Y 66
A   66 S 67
TER
END

