
PFRMAT AL
TARGET T0102
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  4
PARENT 1wja_A
T  14    F   1
V  15    L   2
L  16    D   3
N  17    G   4
V  18    I   5
V  19    D   6
E  20    K   7
A  21    A   8
G  22    Q   9
G  23    E  10
W  24    E  11
V  25    H  12
T  26    E  13
T  27    K  14
I  28    Y  15
V  29    H  16
S  30    S  17
I  31    N  18
L  32    W  19
T  33    R  20
A  34    A  21
V  35    M  22
G  36    A  23
S  37    S  24
G  39    D  25
L  40    F  26
S  41    N  27
L  42    L  28
L  43    P  29
A  44    P  30
A  45    V  31
A  46    V  32
G  47    A  33
R  48    K  34
E  49    E  35
S  50    I  36
I  51    V  37
K  52    A  38
A  53    S  39
Y  54    C  40
L  55    D  41
K  56    K  42
K  57    C  43
E  58    Q  44
I  59    L  45
K  60    K  46
K  61    G  47
TER
END


