
PFRMAT AL
TARGET T0104
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.96 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: icd
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  5
PARENT 2ayq_A
M   1     M    99 
E   2     G   100 
S   3     L   101 
L   4     F   102 
T   5     A   103 
Q   6     N   104 
Y   7     L   105 
I   8     R   106 
P   9     P   107 
D  10     V   108 
E  11     K   109 
F  12     Y   111 
S  13     A   112 
M  14     T   113 
L  15     L   114 
R  16     L   115 
F  17     N   116 
G  18     A   117 
K  19     S   118 
K  20     P   119 
F  21     L   120 
A  22     K   121 
E  23     R   122 
I  24     E   123 
L  25     R   124 
L  26     V   125 
K  27     E   126 
H  29     N   127 
T  30     V   128 
E  31     D   129 
K  32     L   130 
A  33     V   131 
I  34     I   132 
M  35     V   133 
V  36     R   134 
Y  37     E   135 
L  38     L   136 
N  39     T   137 
G  40     G   138 
D  41     G   139 
L  42     L   140 
G  43     Y   141 
A  44     F   142 
G  45     G   143 
K  46     R   144 
T  47     G   150 
T  48     P   151 
T  69     G   152 
L  70     E   153 
V  71     N   154 
E  72     E   155 
E  73     V   156 
Y  74     V   157 
N  75     E   166 
I  76     I   167 
A  77     E   168 
G  78     R   169 
K  79     I   170 
M  80     I   171 
I  81     E   172 
Y  82     K   173 
H  83     A   174 
F  84     F   175 
D  85     Q   176 
L  86     L   177 
Y  87     A   178 
R  88     Q   179 
L  89     I   180 
A  90     R   181 
D  91     R   182 
E  93     K   183 
E  94     K   184 
L  95     L   185 
E  96     A   186 
F  97     S   187 
M  98     V   188 
G  99     D   189 
I 100     K   190 
R 101     A   191 
D 102     N   192 
Y 103     V   193 
F 104     L   194 
T 106     E   195 
D 107     S   196 
S 108     S   197 
I 109     R   198 
C 110     M   199 
L 111     W   200 
I 112     R   201 
E 113     E   202 
W 114     I   203 
S 115     A   204 
E 116     E   205 
K 117     E   206 
G 118     T   207 
Q 119     A   208 
G 120     K   209 
L 122     K   210 
P 123     Y   211 
E 124     P   212 
N 139     D   213 
I 140     V   214 
E 141     E   215 
L 142     L   216 
I 143     S   217 
A 144     H   218 
Q 145     M   219 
T 146     D   222 
N 147     S   223 
L 148     T   224 
G 149     S   225 
K 150     M   226 
N 151     Q   227 
I 152     L   228 
I 153     I   229 
S 154     A   230 
A 155     N   231 
F 156     P   232 
S 157     G   233 
N 158     Q   234 
TER
END

