
PFRMAT AL
TARGET T0104
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1ctq_A
E   31 M 1
K   32 T 2
A   33 E 3
I   34 Y 4
M   35 K 5
V   36 L 6
Y   37 V 7
L   38 V 8
N   39 V 9
G   40 G 10
D   41 A 11
L   42 G 12
G   43 G 13
A   44 V 14
G   45 G 15
K   46 K 16
T   47 S 17
T   48 A 18
L   49 L 19
T   50 T 20
R   51 I 21
G   52 Q 22
M   53 L 23
L   54 I 24
Q   55 Q 25
G   56 N 26
I   57 H 27
G   58 F 28
H   59 V 29
Q   60 D 30
G   61 E 31
N   62 Y 32
V   63 D 33
K   64 P 34
S   65 T 35
P   66 I 36
T   67 E 37
Y   68 D 38
T   69 S 39
L   70 Y 40
V   71 R 41
E   72 K 42
E   73 Q 43
Y   74 V 44
N   75 V 45
I   76 I 46
A   77 D 47
G   78 G 48
K   79 E 49
M   80 T 50
I   81 C 51
H   83 L 52
F   84 L 53
D   85 D 54
L   86 I 55
Y   87 L 56
R   88 D 57
L   89 T 58
A   90 A 59
D   91 G 60
P   92 Q 61
E   93 E 62
E   94 E 63
L   95 Y 64
E   96 S 65
F   97 A 66
M   98 M 67
G   99 R 68
I  100 D 69
R  101 Q 70
D  102 Y 71
Y  103 M 72
F  104 R 73
N  105 T 74
T  106 G 75
D  107 E 76
S  108 G 77
I  109 L 79
C  110 C 80
L  111 V 81
I  112 F 82
E  113 A 83
W  114 I 84
S  115 N 85
E  116 N 86
K  117 T 87
G  118 K 88
Q  119 V 103
G  120 K 104
I  121 D 105
L  122 S 106
P  123 D 107
E  124 D 108
A  125 V 109
D  126 P 110
I  127 M 111
L  128 V 112
V  129 L 113
N  130 V 114
I  131 G 115
D  132 N 116
Y  133 K 117
Y  134 C 118
D  135 D 119
D  136 G 138
A  137 I 139
R  138 P 140
N  139 Y 141
I  140 I 142
E  141 E 143
L  142 T 144
I  143 S 145
A  144 A 146
Q  145 R 149
T  146 Q 150
N  147 G 151
L  148 V 152
G  149 E 153
K  150 D 154
N  151 T 158
I  152 L 159
I  153 V 160
S  154 R 161
A  155 I 163
F  156 R 164
S  157 Q 165
N  158 H 166
TER
END

