
PFRMAT AL
TARGET T0104
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1hgx_A
V  63    D  37
K  64    K  38
S  65    N  39
P  66    P  40
T  67    V  41
Y  68    M  42
T  69    I  43
L  70    C  44
V  71    V  45
I  76    L  46
A  77    T  47
G  78    G  48
K  79    A  49
M  80    V  50
I  81    F  51
Y  82    F  52
H  83    Y  53
F  84    T  54
D  85    D  55
L  86    L  56
Y  87    L  57
R  88    K  58
E  94    H  59
L  95    L  60
E  96    D  61
F  97    F  62
M  98    Q  63
G  99    L  64
I 100    E  65
R 101    P  66
D 102    D  67
Y 103    Y  68
F 104    I  69
N 105    I  70
T 106    C  71
D 107    S  72
S 108    S  73
TER
END


