
PFRMAT AL
TARGET T0105
AUTHOR 4216-9015-4014
REMARK Predictor remarks
METHOD CASP4 submission
METHOD 
METHOD Work by Kelley LA, MacCallum RM & Sternberg MJE
METHOD Biomolecular Modelling Laboratory
METHOD Imperial Cancer Research Fund
METHOD 44 Lincoln's Inn Fields
METHOD London WC2A 3PX, England 
METHOD Tel +44-(0)20-7269-3565 / 3242
METHOD FAX +44-(0)20-7269-3534
METHOD
METHOD Using the results from the 3D-PSSM server:
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD 
METHOD We chose the top hit (which has an E-value of 4.95e-02 when 
METHOD using global rather than global-local searching). 
METHOD
METHOD The alignment has been manually adjusted to preserve 
METHOD the hydrophobic core and the continuity of the secondary 
METHOD structure elements.
METHOD 

MODEL 1
PARENT 1cfb
D  595 I 610
E  596 V 611
N  597 Q 612
I  598 D 613
N  599 V 614
F  600 P 615
K  601 N 616
Q  602 A 617
S  603 P 618
E  604 K 619
L  605 L 620
P  606 T 621
V  607 I 623
T  608 T 624
C  609 C 625
G  610 Q 626
E  611 A 627
V  612 D 628
K  613 K 629
G  614 A 630
T  615 E 631
L  616 I 632
Y  617 H 633
K  618 W 634
E  619 E 635
R  620 Q 636
F  621 Q 637
K  622 G 638
Q  623 D 639
G  624 N 640
T  625 I 644
S  626 L 645
K  627 H 646
K  628 Y 647
C  629 T 648
I  630 I 649
Q  631 Q 650
S  632 F 651
E  633 N 652
D  634 T 653
K  635 S 654
W  637 F 655
F  638 T 656
T  639 P 657
P  640 A 658
R  641 S 659
E  642 W 660
F  643 D 661
E  644 A 662
I  645 A 663
E  646 Y 664
G  647 E 665
D  648 K 666
R  649 V 667
G  650 P 668
S  652 N 669
K  653 T 670
N  654 D 671
W  655 S 672
K  656 S 673
L  657 F 674
S  658 V 675
I  659 V 676
R  660 Q 677
C  661 M 678
G  662 S 679
G  663 N 683
Y  664 Y 684
T  665 T 685
L  666 F 686
K  667 R 687
V  668 V 688
L  669 I 689
M  670 A 690
E  671 F 691
N  672 N 692
K  673 K 693
F  674 I 694
L  675 G 695
P  676 A 696
E  677 S 697
P  678 P 698
P  679 P 699
S  680 S 700
T  681 A 701
R  682 H 702
K  683 S 703
K  684 D 704
V  685 S 705
T  686 C 706
I  687 T 707
K  688 T 708
TER
END


