
PFRMAT AL
TARGET T0105
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1lsi
N  597 R 1
I  598 E 2
N  599 C 3
F  600 Y 4
K  601 L 5
Q  602 N 6
S  603 P 7
E  604 H 8
L  605 D 9
P  606 T 10
V  607 Q 11
T  608 T 12
C  609 C 13
Q  623 P 14
G  624 S 15
T  625 G 16
S  626 Q 17
K  627 E 18
K  628 I 19
C  629 C 20
I  630 V 22
Q  631 K 23
S  632 S 24
E  633 W 25
D  634 C 26
K  635 N 27
K  636 A 28
W  637 W 29
F  638 C 30
T  639 S 31
P  640 S 32
R  641 R 33
E  642 G 34
F  643 K 35
E  644 V 36
I  645 L 37
E  646 E 38
G  647 A 42
D  648 A 43
R  649 T 44
G  650 C 45
A  651 P 46
S  652 S 47
K  653 V 48
N  654 N 49
W  655 T 50
K  656 G 51
L  657 T 52
S  658 E 53
I  659 I 54
R  660 K 55
C  661 C 56
L  669 C 57
M  670 S 58
E  671 A 59
N  672 D 60
K  673 K 61
F  674 C 62
L  675 N 63
P  676 T 64
E  677 Y 65
P  678 P 66
TER
END

