
PFRMAT AL
TARGET T0105
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1qub_A
N  597 S 244
I  598 C 245
N  599 K 246
F  600 V 247
K  601 P 248
Q  602 V 249
S  603 K 250
E  604 K 251
L  605 A 252
P  606 T 253
V  607 V 254
T  608 V 255
C  609 Y 256
G  610 Q 257
E  611 G 258
V  612 E 259
K  613 R 260
G  614 V 261
T  615 K 262
L  616 I 263
K  618 Q 264
E  619 E 265
R  620 K 266
F  621 F 267
K  622 K 268
Q  623 N 269
G  624 G 270
T  625 L 272
S  626 H 273
K  627 G 274
K  628 K 287
C  629 C 288
I  630 S 289
Q  631 Y 290
S  632 T 291
E  633 E 292
D  634 D 298
K  635 G 299
K  636 T 300
W  637 I 301
F  638 E 302
T  639 V 303
P  640 P 304
R  641 K 305
E  642 C 306
F  643 F 307
E  644 K 308
I  645 E 309
E  646 H 310
G  647 T 318
D  648 D 319
R  649 A 320
G  650 S 321
A  651 D 322
S  652 V 323
K  653 K 324
N  654 P 325
W  655 C 326
TER
END

