
PFRMAT AL
TARGET T0105
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 2bus
G  624 G 2
T  625 A 3
S  626 Q 4
K  627 V 5
K  628 D 6
C  629 C 7
I  630 A 8
Q  631 E 9
S  632 F 10
E  633 K 11
D  634 D 12
K  635 P 13
K  636 K 14
W  637 V 15
F  638 Y 16
T  639 C 17
P  640 T 18
R  641 R 19
E  642 E 20
F  643 S 21
E  644 N 22
I  645 H 24
E  646 C 25
G  647 G 26
D  648 S 27
R  649 N 28
G  650 G 29
A  651 E 30
S  652 T 31
K  653 Y 32
N  654 G 33
W  655 N 34
K  656 K 35
L  657 C 36
S  658 A 37
I  659 F 38
C  661 C 39
K  667 K 40
V  668 A 41
L  669 V 42
M  670 M 43
E  671 K 44
N  672 S 45
K  673 G 46
F  674 G 47
L  675 K 48
P  676 I 49
E  677 N 50
P  678 K 52
P  679 H 53
S  680 R 54
T  681 G 55
R  682 K 56
K  683 C 57
TER
END

