
PFRMAT AL
TARGET T0105
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 2reb
D 595    G 272
E 596    E 273
N 597    L 274
I 598    V 275
N 599    D 276
F 600    L 277
K 601    G 278
Q 602    V 279
S 603    K 280
E 604    E 281
L 605    K 282
K 613    W 290
G 614    Y 291
T 615    S 292
L 616    Y 293
Y 617    K 294
K 618    G 295
E 619    E 296
R 620    K 297
F 621    I 298
K 622    G 299
Q 623    Q 300
G 624    G 301
T 625    K 302
S 626    A 303
K 627    N 304
K 628    A 305
C 629    T 306
I 630    A 307
Q 631    W 308
S 632    L 309
E 633    K 310
D 634    D 311
K 635    N 312
W 637    P 313
F 638    E 314
T 639    T 315
P 640    A 316
R 641    K 317
E 642    E 318
F 643    I 319
E 644    E 320
I 645    K 321
K 653    K 322
N 654    V 323
TER
END


