
PFRMAT AL
TARGET T0105
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1ira_Y
G 610    N  29
E 611    E  30
V 612    H  31
K 613    K  32
G 614    G  33
T 615    T  34
L 616    I  35
Y 617    Y  38
K 618    K  39
E 619    D  40
R 620    D  41
F 621    S  42
K 622    K  43
Q 623    T  44
G 624    P  45
T 625    V  46
S 626    S  47
K 627    S  52
K 628    R  53
C 629    I  54
I 630    H  55
Q 631    Q  56
S 632    H  57
E 633    K  58
D 634    E  59
K 635    K  60
K 636    L  61
W 637    W  62
F 638    F  63
T 639    V  64
P 640    P  65
R 641    A  66
E 642    K  67
F 643    V  68
E 644    E  69
K 656    Y  75
L 657    C  76
S 658    V  77
I 659    V  78
R 660    R  79
C 661    N  80
G 662    S  81
G 663    S  82
Y 664    Y  83
T 665    C  84
L 666    L  85
K 667    R  86
V 668    I  87
L 669    K  88
M 670    I  89
E 671    S  90
N 672    A  91
K 673    K  92
F 674    F  93
L 675    V  94
P 676    E  95
E 677    N  96
P 678    E  97
P 679    P  98
TER
END


